Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00505 ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTAATTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCTGGCCATCCAGACCCTGAGGCAGAAGTGATAGCTTTGAGTCCTCAAACCTTGTTAGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAAAGAGGACATAATTTACCATGGAAGTTAAAGAAAAGAAACAGCAAAGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAATCAACATGTGTTCATCATGAACCTTCAAGAGCACTTGGTGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGTTCTAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCAAAAATTTGTGGAACCAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTCATCACTCATAGAGCCTTCTGTGATGTTTTATCACAAGAGAGTGCTATATCAATTTCAGCAGTAAACCCTTTATTCTCTTCTCACTCTCAATTTAATCATCATAGCCATAATTTCCAACCACCATCCCTAAAAAAAGAACAAGACTTCAATATTTTAAGACCAGAAATAATACCATCATGGTTCCCTTCCTCAAATACACCACAACAATTACTCCCTACTCATTTTAGCCATTATCATCAAAACCCTAACCCTACAACTTTATTTCATTCAAATTTCAACTCCAACAATATTATTACCTCTTCTCCTCACATGTCTGCCACTGCTTTACTGCAAAAAGCATCACAAATTGGTGTAACAGTGAGTAAAACAGAACCTTGTATACCCCACTTAATGCAAACTCACGTGCCTTTTATGGCTTCTTCACGTGAAGAAATAGGGAATAGTACTGCTGGTTTTTCTCATTGTTTGGCTTCATATGGAAATAAAGCTGTTACTAATACAGAAGAAGAATCTTCTCTTTTGCATGATGTGATATTTGGTAGTAATGAGAATTCATCACAATTTGAAAGTGTTACTGCTGCTATGAGTATGAGGGGAGGAATGTTTGATCCACAAATAGATAATAATAACTTTGAGGGACAATATTCCAATTTTGGTAAAAGCAACAACATTATGAAAGGTGGTGGTGTCAATGCAATTAATGATGATGAAATGACAAGGGATTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATGACTTGTTGTTTGGTATTTCTGGAATTCATGATCATCCTTTGGGTTCTTTATCTTATGGTAAACAAAATCAAAACCAAATTCCTTGGCGCCAAGGCTAA 1422 0.3594 MMKGLSVDENMSNLTSASSEISASNSATKNGKASTNLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSKEIIRKKVYVCPESTCVHHEPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESAISISAVNPLFSSHSQFNHHSHNFQPPSLKKEQDFNILRPEIIPSWFPSSNTPQQLLPTHFSHYHQNPNPTTLFHSNFNSNNIITSSPHMSATALLQKASQIGVTVSKTEPCIPHLMQTHVPFMASSREEIGNSTAGFSHCLASYGNKAVTNTEEESSLLHDVIFGSNENSSQFESVTAAMSMRGGMFDPQIDNNNFEGQYSNFGKSNNIMKGGGVNAINDDEMTRDFLSLGAFSQRDDLLFGISGIHDHPLGSLSYGKQNQNQIPWRQG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00505 473 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Trre2g00505 473 MobiDBLite consensus disorder prediction 16 54 - -
Trre2g00505 473 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Trre2g00505 473 Gene3D Classic Zinc Finger 105 196 - -
Trre2g00505 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 440 IPR031140 -
Trre2g00505 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Trre2g00505 473 MobiDBLite consensus disorder prediction 16 42 - -
Trre2g00505 473 FunFam protein indeterminate-domain 12-like 50 119 - -
Trre2g00505 473 Gene3D Classic Zinc Finger 67 94 - -
Trre2g00505 473 SMART c2h2final6 113 143 IPR013087 -
Trre2g00505 473 SMART c2h2final6 71 93 IPR013087 -
Trre2g00505 473 SMART c2h2final6 148 168 IPR013087 -
Trre2g00505 473 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Trre2g00505 473 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00505 Trre-Chr2 4106027 4108966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00505 7 312 IDZ Gene Family AT1G55110 53.824 7.37e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g00505 zf-C2H2_jaz 4.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00505 K25870 - qsu:112016383 445.277