Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00493 ATGACTCCTGTTTCACTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCATCAATTTTTCTCCTATTCATCAGGACCCTCCAACTCCAACCTTGTTTAACTTGCTTGGAGGAGACTATACCCAAAATCATGATCATCATCAGGATCATGATAAGCTGATATTTGAACAAGATGGATCATCATCAAACAATGATGAACAAGTCTATAATAATTCATCAAGTGATCCAAACAGTGCACGTGACACAAATTTATCATCTTCCTTAGAAGAAGAAGAAAGTGGTCACGGGTCAGAGAAATGGATGTCTTCAAAGATGAGGTTCATGAAAAAAATGATCAACACAACAACTGCTACTACTGATGATGCTACCAAAACTAATTCAATGATGAGATCAAGTAACAACAGTGCTGACAAAGTAGCAATTATCAACACAAATGCTGCTGCTACCACAAATCCAAGTCAAAGTAGCCCTCGTAGTAATAACAGCGGCGGTAACAACGTTACTAGGGTTTGCTCTGATTGTAAAACAACCACTACCCCACTTTGGAGAAGTGGCCCTATGGGCCCTAAGTCGCTTTGCAATGCGTGTGGAATTAGACAAAGGAAAGCAAGAAGGGCAATGGCAGAAGCTGAAGCTGCAAATGGTTTGTCCACTTCCCCAAAGCCTAAAGTGCATAACAAGGAAAAGAAGCCTCGTGTAAACAATACTACACAATTCAAGAAAAAGAACAAGTCTATTACTACTACTACTACTACTCCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAACAAGCTTGAATCTTATGCATTGAATTTGAGAAACAACTCGGATTTTGAAGATGTGTTTCATTCTGATGAAGCAACTGAGGCGGCTTTACTTCTTATGCGTATATCTTCTGGCAAATATTTCACTCTGAATTAG 939 0.394 MTPVSLNPPGPNSLLQGQNQFINFSPIHQDPPTPTLFNLLGGDYTQNHDHHQDHDKLIFEQDGSSSNNDEQVYNNSSSDPNSARDTNLSSSLEEEESGHGSEKWMSSKMRFMKKMINTTTATTDDATKTNSMMRSSNNSADKVAIINTNAAATTNPSQSSPRSNNSGGNNVTRVCSDCKTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAEAANGLSTSPKPKVHNKEKKPRVNNTTQFKKKNKSITTTTTTPTTSAGSSSQDVNKLESYALNLRNNSDFEDVFHSDEATEAALLLMRISSGKYFTLN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00493 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 45 306 - -
Trre2g00493 312 CDD ZnF_GATA 174 206 IPR000679 GO:0006355|GO:0043565
Trre2g00493 312 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Trre2g00493 312 Gene3D - 170 254 IPR013088 GO:0006355|GO:0008270
Trre2g00493 312 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Trre2g00493 312 MobiDBLite consensus disorder prediction 242 266 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 46 60 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 23 104 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 120 139 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 211 266 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 152 171 - -
Trre2g00493 312 MobiDBLite consensus disorder prediction 89 104 - -
Trre2g00493 312 SMART GATA_3 169 220 IPR000679 GO:0006355|GO:0043565
Trre2g00493 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 209 - -
Trre2g00493 312 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Trre2g00493 312 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00493 Trre-Chr2 4040542 4043014 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00493 81 306 C2C2-Gata Transcription Factor Family AT4G26150 37.449 4.46e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g00493 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00493 - - mtr:11422443 282.722