Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00491 ATGAGAGCAGAAAATGATTATACTCTATTACAAGAGTTGGAAGAACAAAAGGAATTAGAAAACCGTGCTAAGGCTAAAAACACCATTTTGGTTTGCTCCGAATGTAAGACAAGGAGTACCCCACTTTGGAGGAAGGGCCCTAAGGGTCCAAAGACACTTTGTAATGCTTGTGGACTGAGATTGGCAAGGTTGGCAAAGGCAGCTGCTAAAGAAGATTGTGGAAAGAACAAGGCTCCTGCTAATTCTACTGGCTCATCATCTGCTTCTACTAAGAAGTGA 279 0.4229 MRAENDYTLLQELEEQKELENRAKAKNTILVCSECKTRSTPLWRKGPKGPKTLCNACGLRLARLAKAAAKEDCGKNKAPANSTGSSSASTKK 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00491 92 CDD ZnF_GATA 31 58 IPR000679 GO:0006355|GO:0043565
Trre2g00491 92 Pfam GATA zinc finger 32 62 IPR000679 GO:0006355|GO:0043565
Trre2g00491 92 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 67 - -
Trre2g00491 92 Gene3D - 30 67 IPR013088 GO:0006355|GO:0008270
Trre2g00491 92 SMART GATA_3 26 77 IPR000679 GO:0006355|GO:0043565
Trre2g00491 92 MobiDBLite consensus disorder prediction 70 92 - -
Trre2g00491 92 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 86 - -
Trre2g00491 92 ProSiteProfiles GATA-type zinc finger domain profile. 26 59 IPR000679 GO:0006355|GO:0043565
Trre2g00491 92 ProSitePatterns GATA-type zinc finger domain. 32 57 IPR000679 GO:0006355|GO:0043565
Trre2g00491 92 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00491 Trre-Chr2 3993951 3994531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00491 26 60 C2C2-Gata Transcription Factor Family AT5G26930 71.429 7.27e-14 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g00491 GATA 6.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00491 - - tcc:18588059 73.1738