Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00490 ATGGTGAAACAAAATAACAGTGCTAGCAAATCAACTTCAAAAAAACGTTTATCTTGTCCTAGGATGAGAGCAATTAATACTCCAAGAGTAGTAAGAAGAGTAACCAAAACCACTACTCATGAGAAGAGTAAAAAAACAATCAAACCAAGAAAAAGAGCAAACAAAACCACTACTGAGAAAAAGATACAAAATCCTGATCCAACTAGTGAACCAAGAAAAAAATTTACTTTTTGCATCATGAGAGCAGAAAATGATTATACTCTATTACAAGAGTTGGAAGAACAAAAGGAATTAGAAAACCGTGCTAAGGCTAAAAACACCATTTTGGTTTGCTCCGAATGTAAGACAAGGAGTACCCCACTTTGGAGGAAGGGCCCTAAGGGTCCAAAGACACTTTGTAATGCTTGTGGACTGAGATTGGCAAGGTTGGCAAAGGCAGCTGCTAAAGAAGATTGTGGAAAGAACAAGGCTCCTGCTAATTCTACTGGCTCATCATCTGCTTCTACTAAGAAGTGA 516 0.3779 MVKQNNSASKSTSKKRLSCPRMRAINTPRVVRRVTKTTTHEKSKKTIKPRKRANKTTTEKKIQNPDPTSEPRKKFTFCIMRAENDYTLLQELEEQKELENRAKAKNTILVCSECKTRSTPLWRKGPKGPKTLCNACGLRLARLAKAAAKEDCGKNKAPANSTGSSSASTKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00490 171 MobiDBLite consensus disorder prediction 1 74 - -
Trre2g00490 171 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g00490 171 CDD ZnF_GATA 110 137 IPR000679 GO:0006355|GO:0043565
Trre2g00490 171 SMART GATA_3 105 156 IPR000679 GO:0006355|GO:0043565
Trre2g00490 171 Gene3D - 93 166 IPR013088 GO:0006355|GO:0008270
Trre2g00490 171 MobiDBLite consensus disorder prediction 157 171 - -
Trre2g00490 171 Coils Coil 79 99 - -
Trre2g00490 171 MobiDBLite consensus disorder prediction 149 171 - -
Trre2g00490 171 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 18 165 - -
Trre2g00490 171 Pfam GATA zinc finger 111 141 IPR000679 GO:0006355|GO:0043565
Trre2g00490 171 ProSiteProfiles GATA-type zinc finger domain profile. 105 138 IPR000679 GO:0006355|GO:0043565
Trre2g00490 171 ProSitePatterns GATA-type zinc finger domain. 111 136 IPR000679 GO:0006355|GO:0043565
Trre2g00490 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00490 Trre-Chr2 3993714 3994531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00490 105 139 C2C2-Gata Transcription Factor Family AT5G26930 71.429 3.99e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g00490 GATA 2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00490 - - tcc:18588059 73.1738