Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00486 ATGCCCAAAATGAAGCATCTACTTCGAAAGCTTCACATCGGTGGTGGCGCCACCGCAACCACAACCGCGGCATTACCACTTTCTCATTCCGATTCTCACACTCCTCTTCCTCCTCCTCCTTCTTCTTCTACATCTCTCAGTCCTTCTCCATCTCCTTCACCTTCTCCTTCTCCAACCGTTGCTAATGTTAACAATTCACGAAACGACGCCGATATAGGTGTCAACGATTTTAATCTTTTGCAGGAAGAAGAGTTTCAGGTTCAATTGGCTCTTGCTATTAGTGCTTCTGATTCCGATCCTCATGATGTTGATGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTTGGTTATTCTGCTTCGATTACGGATACTCCTGCACTTGTTCAGTTTCAATCGCTTCGTTATTGGAATTACAACGTAATTGCTTATGACGAGAAAGTGATGGATGGGTTTTATGATGTCTATGGGATCGACTCAAGTTTAATTGAACGGGGAAAGATGCCATTGCTGGTGGATCTGAAAACTGTACCCTCCTCACGAAATGTAGATTATGAAGTGATCTCGGTGAATCGCATTATTGATGTTGAGCTATGTCAGCTTGAGAAAAAAGCCTGTGCCTTGTTTGAAGAGTGTTCTGTTTCTGAACTAGGACTGTTTTTGAGTGGCTTAATCCAGAGACTTGCTGATGTTGTTGTTAATAGAATGGGTGGACCGGTCGGCAGTGCTGATAATATCACGACAAAGTGGGCTTTGAGGAGTCGTGAATTACAAAATTCTTTAAGAACTGTCGTTCTTCCTCTTGGCTGTCTAGATGTTGGACTTTCACGTCACCGGGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCCTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCTGATGATGGAAGTGAATATATTATTGATATGATGGGTGCTCCTGGTACTCTTATTCCTGCTGAGGTGCCCAGCAGTCAGATCCAAAACTATGGTTTTGCTGGTAGGGATTTCGCAGAGATTGCAGGACAACCTAACAACTTATATCCAATGCTTGCTAATGAAACTGATGTTCTGGGAGTATTGTCTGATTGTACCGTAGGGAGGGTCCAGACAAAAGAATTAGTAGAAATTAGCAGTCAAACAAAACCAGATGAAATGAATCGTGTTAAGGTAAATGAAGCAGGGAGATATAAGCATACAGCCGCGTATGAATGCTCATCACATCCAGAATCATCACATGCAGAAAACATGCATGTAAAAAATGTCTCCCAGTATGTTCTCAGTGCCGCAAAAAACCCAGACTTTGCCTCAAAACTGCACACTATTCTATTAGAAAGCGGTGCATCACCTCCTTCCGATCTTTTTTCAGATATGAATTCCCGAGATAGGGGTTCAGATACTGTTCAAGCTGACCAAAATAGGCTGTTATTAAGTTATGATAAGTCTCTCATACTCCCTCAAGGAGTGGACCCTGCTGGTGGTAATACTAGGTTATATCAATTGGCCGACCAGTTAGCCGAACAGCAAAAAGAGTTACACACTGATGCCACTGAGTTTTATGATTCTTCGCAGAGTAATACAAGGAATGCCTTTGCAACTGTTTCCGGTAAAGATAGTGATATAGAGCAATCTAATCCATTAATTGTTGACTTCACTTCTTTTAATACACGCAAAGAAAAGTGTCCTGAGTCTTCCTTGCCCAAGGCAGCCCTTTCTTGCAAAAGGCATAATGGCGTTGAATGTTTTTGTGATGATGACGAAAGTGGTCCTAGAAATGAGGCTGGAGCTTCTTTGAATAACATTGAAGTTGGGAACGATTCAGTCATTCAAATAAACGAGACAGTCAGTGGAGATTGCATCATATACGATGACAGTAAAAGCAAGAAAGTTCACCCAATACTTGGGGAAGACACGCAATGGGAAGTTCAGTGGGAGGATCTTCGCATTGGTGAGCGTATCGGTATTGGTTCTTACGGAGAAGTTTACCGTGCTGATTGCAATGGCACCGAAGTTGCTGTAAAGAAGTTTTTAGACCAAGATGTCTCTGGTGATGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGTCATCCTAATGTTGTGCTCTTCATGGGAGCAATCACTCGTCCTCCACATTTCTCTATATTGACAGAGTTTCTTCCTAGAGGCAGTTTATATAGGCTGTTGCATCGTCCCAATCTTGTACTTGATGAGAAAAGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTATTTGCACACCAGCCATCCTCCCGTTGTCCATCGAGATTTAAAGACTCCAAACCTTCTTGTTGACAGACATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACCATACATATTTATCATCGAAGTCATGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTCTTACGGAACGAGCCTGCCAATGAGAAGTGTGATGTATATAGTTTTGGTGTGATCTTGTGGGAGTTAATTACCACGAAAATCCCATGGCATGGTTTGAACCCGATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGAAATGGATCCAGTAGTAGCTCAAATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGACCATCCTTCTCACAACTGATGTCCCGTCTTTACCGTCTTCACCAATTGGTTGTCCGTAAAACGGGCTCTACACAATAA 2793 0.4279 MPKMKHLLRKLHIGGGATATTTAALPLSHSDSHTPLPPPPSSSTSLSPSPSPSPSPSPTVANVNNSRNDADIGVNDFNLLQEEEFQVQLALAISASDSDPHDVDESAQIDAAKQISLGYSASITDTPALVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDSSLIERGKMPLLVDLKTVPSSRNVDYEVISVNRIIDVELCQLEKKACALFEECSVSELGLFLSGLIQRLADVVVNRMGGPVGSADNITTKWALRSRELQNSLRTVVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRDFAEIAGQPNNLYPMLANETDVLGVLSDCTVGRVQTKELVEISSQTKPDEMNRVKVNEAGRYKHTAAYECSSHPESSHAENMHVKNVSQYVLSAAKNPDFASKLHTILLESGASPPSDLFSDMNSRDRGSDTVQADQNRLLLSYDKSLILPQGVDPAGGNTRLYQLADQLAEQQKELHTDATEFYDSSQSNTRNAFATVSGKDSDIEQSNPLIVDFTSFNTRKEKCPESSLPKAALSCKRHNGVECFCDDDESGPRNEAGASLNNIEVGNDSVIQINETVSGDCIIYDDSKSKKVHPILGEDTQWEVQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKTPNLLVDRHWVVKVCDFGLSRMKHHTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELITTKIPWHGLNPMQVVGAVGFQNKRLEIPEEMDPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLHQLVVRKTGSTQ 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00486 930 CDD STKc_MAP3K-like 669 915 - -
Trre2g00486 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Trre2g00486 930 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Trre2g00486 930 MobiDBLite consensus disorder prediction 32 57 - -
Trre2g00486 930 ProSiteProfiles Protein kinase domain profile. 663 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00486 930 Gene3D Transferase(Phosphotransferase) domain 1 742 926 - -
Trre2g00486 930 Pfam Protein tyrosine and serine/threonine kinase 663 915 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 Gene3D Phosphorylase Kinase; domain 1 656 740 - -
Trre2g00486 930 FunFam Serine/threonine-protein kinase isoform 1 653 741 - -
Trre2g00486 930 PRINTS Tyrosine kinase catalytic domain signature 737 750 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 PRINTS Tyrosine kinase catalytic domain signature 842 864 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 PRINTS Tyrosine kinase catalytic domain signature 886 908 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 PRINTS Tyrosine kinase catalytic domain signature 823 833 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 PRINTS Tyrosine kinase catalytic domain signature 776 794 IPR001245 GO:0004672|GO:0006468
Trre2g00486 930 Pfam Ethylene-responsive protein kinase Le-CTR1 131 334 - -
Trre2g00486 930 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 118 926 - -
Trre2g00486 930 MobiDBLite consensus disorder prediction 19 68 - -
Trre2g00486 930 SMART serkin_6 663 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00486 930 FunFam Serine/threonine-protein kinase CTR1 742 925 - -
Trre2g00486 930 SUPERFAMILY Protein kinase-like (PK-like) 651 916 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00486 Trre-Chr2 3953886 3962595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00486 611 929 MAP Kinase Kinase Kinase AT5G11850 76.803 2.92e-173 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre2g00486 PK_Tyr_Ser-Thr 7.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00486 K04424 - gmx:100779137 1305.81