Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00478 ATGTTAACACCAAAATCACCCCCACACTCACTCTATTGTCACAACCACTACCCCGTCTTGATGCTGGTGCCAGTTTCTCTCCTTATATTCATCTCTCTTCTTCTCCTACCTCATTCCTCTCTCGCCGTTCGACCTATTCACTCCGATCCGTTCGACTTCCAACTCGCCAACTCAACCGAATCCAACGTCTCCCTCTCCACTCCTCGACAAGGTTCCTTCGCTGACATCATTGATCGTGCTCTTCAGCATGAGTTCACCGACACCGATCAAAACGAAGTGCCTGATGCGGGAGGTTTCAACAACAGTGTAGCAGAACAACAGGCTGTTCTAGAGACTGTGGCCAGAGTCACGCCGAACAAGAATGACACTAAAGATGAAAAGTCATTTCAGCTCCATCATGTATTCAATAGAGGCGAGGACACCCCAATGTTAATAGATCGAAAGGACAATGTATTTATCATTTCTAACTTCAAATCCAAGTATCCAGTGCTGCAGCTAGATTTACGATTGATTTCAGACTTGGTCATTGCTATTGTTTCGGCAACTTGTGGTGGTGTTGCATTTGCTTTTGCTGGACAACCGGTCATTACTGGATATCTTCTAGCTGGCTCCATTGTTGGACCTGGAGGCTTTAACTTCATCAATGAAATGGTGCAGGTGGAAACAGTGGCTCAATTTGGCGTAATATTTATTCTCTTTGCATTGGGCCTCGAGTTTTCCATGGCAAAGCTTCGAGTTGTTCGATCTGTTGCTGTTCTTGGAGGCTTACTTCAAATTTTTCTATTTATGTGCATGTGTGGTTTTACTGTATCGTTATGTGGTGGTAAAGCTTCAGAAGGGATTTTTGTTGGTGCTTTCCTTTCTATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAATAATACTAATGCCCTTCATGGCCAAGTCACAATTGGGACCCTTATTTTACAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTTCCTGTTTTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTATCAATGACAAAACTGTTGGTGACATTGATTGCATTTCTCTCTATTCTGTCTATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGCCTATCATCACAGACAAATGAACTCTATCAGCTGGCATCTGTTGCGTTCTGCTTGCTTGTAGCCTGGTGTAGCGATAAGCTGGGATTAAGTCTAGAACTAGGTTCCTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTGGCTCAACATACACTAGAGCAAATTGAACCTATTTGCAATCTTTTCGCTGCTCTTTTCCTTTCCAGCATTGGAATGCTGATTCATGTTCATTTTCTTTGGAACCATGTTGATATTTTGGTAGCATCTGTTATTTTAGTGATTGTTATAAAAACAATCATAATTGCTTCAGTTGTGAAAGGATTTGGTTACAATAACAAGACTTCAGTACTTGTAGGAATGTCCATGGCACAAATAGGAGAATTTGCTTTTGTTCTTCTCAGTCGTGCTTCAAATCTTCATCTAGTTGAGGGTAAACTATATCTGCTGCTTCTTGGGACCACAGCTCTTAGTCTGGTGACAACTCCTTTACTTTTCAAGCTGATCCCTGCTGTAGTGCATCTTGGTGTGCTATTGAGGTGGTTTTCTCCTGATAGTGCAGTAGAGATTGGATATAAGGTAGACAACCTCCTTCGCTCAGATAGCATTAAGCAACGGATAGTTTTGATGGACAAAGAAGCTCGCGATTGCTAA 1785 0.4246 MLTPKSPPHSLYCHNHYPVLMLVPVSLLIFISLLLLPHSSLAVRPIHSDPFDFQLANSTESNVSLSTPRQGSFADIIDRALQHEFTDTDQNEVPDAGGFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHHVFNRGEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFINEMVQVETVAQFGVIFILFALGLEFSMAKLRVVRSVAVLGGLLQIFLFMCMCGFTVSLCGGKASEGIFVGAFLSMSSTAVVLKFLMEKNNTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSILSILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIATTDLAQHTLEQIEPICNLFAALFLSSIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYNNKTSVLVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSAVEIGYKVDNLLRSDSIKQRIVLMDKEARDC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00478 594 Pfam Sodium/hydrogen exchanger family 175 544 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre2g00478 594 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 60 576 IPR045158 GO:0015386|GO:0071805|GO:1902600
Trre2g00478 594 Gene3D - 168 551 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00478 Trre-Chr2 3915382 3922652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00478 68 592 Antiporters AT5G11800 80.038 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00478 K26735 - gmx:100811030 942.954