Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00476 ATGGAGAATGGTGTATACAATGTTCCAATGAACATGGCTGGTCAAATTTATAATGTCATAGAAGATATCACACAACAATTAACACAAAAGCCACTCATTCAATGCTATTCATTTGACCTTAACAATCAAAACATTATAAATGGAATTCCAATACTTTCTAGTGAACAAAATCAACAACATGTTGATGGAAGTAGTAGTAGTAGTAGTTTCATAAATCATCCAAATATTGCTGATTCTACTTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATTTCATTGTTAACAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTTGAAGCTATGGTGGTTCCATACATGTTCAATAATTGGAATGATGCATCAAACTCAAACCCTTTGTCTGCAACTTTTGGTGATAATAGTTGTCATGTCAACAAGTTTTTGAAAGCTCAAGAGGGTAATGATAATGGATTCATGCCGTCATATTCGTCGATAGCGAACATTGATCCGAACGGATGGCAATCGTCGTCACATGCTGCAAATTTGACAAATCTTGCTTATAGTTCATCAAATTGTAGCAATGATCTTTCACTAAGTCTTGCAACATCTCCAAATTCAGGTCAATGTTCAGAGATTAGTTGCTCTGACTTAACTCATAGCATGAATGGAACAAGATCAGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTTAAATTTTCACCGGCGATATTAGGATCAAGATACCTTGCTGTAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTAAATCTTGATGAGATAAATCATTCGGCTTCCGGTGTTAGAGGAGTACGAGGAAATAAATCAAGTTCATCGAATGCAGACAAGCGAAGGATAGGAGTAAACCGCGACAATAGTTCTATGTCAGAAGCATATGCTGATTCTTCATTGCAAAGACATGCTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTTCAGCTGGTGGACAGCCAATATAATCGATGTTTGGAAGAGATTCACACAATTGTATCTGCATTTCATGCTGCGACTGAGCTTGATCCTCAAATACATGCGCATTTCGCTGTTAAAACAGTTTCTCGACTATATAAGGATTTGAGAGACAGGATTAGTAATCATATTCTTGCCATGGGATCTAACTTTAACAGCTCATGGTCAGAAGAGGATAATGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGGAAAGACCAGTTATGGAGGCCTCAAAGGGGCTTGCCTGAAAAATCTGTTTCGGTTCTTCGCGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGCCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGACTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAGGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCCGGATAAGCATTAACAATCAATTGTTTAATATCAATTGA 1629 0.3677 MENGVYNVPMNMAGQIYNVIEDITQQLTQKPLIQCYSFDLNNQNIINGIPILSSEQNQQHVDGSSSSSSFINHPNIADSTSFVTSQHGRTIVENPSNFIVNNNDFSVPARIGLQENFEAMVVPYMFNNWNDASNSNPLSATFGDNSCHVNKFLKAQEGNDNGFMPSYSSIANIDPNGWQSSSHAANLTNLAYSSSNCSNDLSLSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLNLDEINHSASGVRGVRGNKSSSSNADKRRIGVNRDNSSMSEAYADSSLQRHAAESKKSQLLMLLQLVDSQYNRCLEEIHTIVSAFHAATELDPQIHAHFAVKTVSRLYKDLRDRISNHILAMGSNFNSSWSEEDNELSVETSFIQKQWALQQLKRKDQLWRPQRGLPEKSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQLFNIN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00476 542 ProSiteProfiles 'Homeobox' domain profile. 440 503 IPR001356 GO:0003677
Trre2g00476 542 SMART prehox3 253 400 IPR006563 -
Trre2g00476 542 Pfam Associated with HOX 259 399 IPR006563 -
Trre2g00476 542 MobiDBLite consensus disorder prediction 294 319 - -
Trre2g00476 542 Pfam Homeobox KN domain 460 499 IPR008422 GO:0003677|GO:0006355
Trre2g00476 542 CDD homeodomain 443 503 IPR001356 GO:0003677
Trre2g00476 542 MobiDBLite consensus disorder prediction 296 310 - -
Trre2g00476 542 Gene3D - 446 525 - -
Trre2g00476 542 SMART HOX_1 443 507 IPR001356 GO:0003677
Trre2g00476 542 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 181 526 - -
Trre2g00476 542 SUPERFAMILY Homeodomain-like 444 512 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00476 Trre-Chr2 3879882 3882425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00476 199 516 Homeobox Transcription Factor Family AT4G32980 56.386 6.12e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre2g00476 POX 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00476 - - gmx:100812648 623.624