Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00449 ATGGGAAGAGCTCCTTGTTGTGACAAAGACAAAGTTAAGAGAGGACCATGGTCTCCTGATGAAGATGCAAAACTCAAGAATTATTTAGCAATTCATGGCACTGTTGGAAATTGGATTGCATTGCCTAAAAAAGCTGGCCTTAAGCGGTGTGGAAAGAGTTGTCGTCTAAGGTGGCTGAATTATCTTAGGCCTGACATCAAACATGGAGGCTTTACTGAGGAAGAAGATACCATCATTTGTACCCTCTATGCTCAAATGGGTAGCAGATGGTCTGCCATAGCATCAAAACTACCTGGGAGAACAGACAATGATGTAAAAAACTATTGGAACACAAAACTGAAGAAGAAAATTATGGCAGGAAAAGTTGGCCTCAAATCATTGACTGAAAATGACAATACTGTCCCTTCAACCCCATCAGTGACTCAAAATTGCAACATTATGTTAGACAATAATTTTGATGCTAGTTATGGATTCAAGAATAATGAAAAAAACATTGGTTTTGATCAAATTCATGATGTTGGTGTCTCAGAAATTGGTGCAAGTAACAACAATATTGATATTAATCCTATGGTGTCAATGTCTCAAGACAATTCAAGCATTGGAGTGAACAACAATTGTGTATCACTTCGAGATCAAGCTGGTGATGAATCTTTGGAACCACTAATGGATTTTGGCTTTGGAGTTGGTAGTGATTTTGCTTCAAGTTGTTGCTTTCCTGAGTGGGTTGATTTTAGTTTTGCTGACATTAAGACAAATTGA 759 0.3781 MGRAPCCDKDKVKRGPWSPDEDAKLKNYLAIHGTVGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDTIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVGLKSLTENDNTVPSTPSVTQNCNIMLDNNFDASYGFKNNEKNIGFDQIHDVGVSEIGASNNNIDINPMVSMSQDNSSIGVNNNCVSLRDQAGDESLEPLMDFGFGVGSDFASSCCFPEWVDFSFADIKTN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00449 252 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre2g00449 252 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre2g00449 252 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre2g00449 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre2g00449 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre2g00449 252 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre2g00449 252 SMART sant 13 64 IPR001005 -
Trre2g00449 252 SMART sant 67 115 IPR001005 -
Trre2g00449 252 FunFam Transcription factor RAX3 70 137 - -
Trre2g00449 252 CDD SANT 71 113 IPR001005 -
Trre2g00449 252 FunFam Transcription factor RAX3 7 68 - -
Trre2g00449 252 PANTHER OS09G0431300 PROTEIN 1 142 - -
Trre2g00449 252 Gene3D - 70 137 - -
Trre2g00449 252 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre2g00449 252 CDD SANT 16 62 IPR001005 -
Trre2g00449 252 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00449 Trre-Chr2 3681894 3684040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00449 1 137 MYB Transcription Factor Family AT5G57620 69.343 4.14e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g00449 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00449 K09422 - gmx:100789985 330.487