LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g00446	ATGGAGGAATACACGAATAATCCAAATCAAAATCAAAATCAAAATCAAAGTTCAAGGCCAAATTTCTTGTACTCTATTGGTAGTGGAAACAACCAACACCAAAACCAACATCATAATAATCAAATTCCAATGAACATGTTTCATGTTCAATCAAGTGGATCAGATCATTGTTTTCAACAACAACACACTGCTGTGAAAACTGAAGCAAATAGTAGTTCACAACTTCACACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCTCACAATAATATTATGCATAATAATAATCATCATCAAGGAGGAGGAGGAGGAGGAGGAGGTGGGAGTCCAAGCAGTTCTAGTAATGAAGCTGAAGCTATAAAAGCTAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCACCGGATGTGGTGGCGCGTCTGGTTGCGGCTAGGCAAGAGTTTGAAGCACGACAAAGATCTTCAGTTAATTCCAGGGAAAATTCCAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAAGAGAATGGAAACTCAACTAAATACTCTTTGCAATGGTCCCCTTCGTATCTTCCCTCCTGAAGATAAAAATGAAGGCGCTGATTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCTGAGATTGATCCTCGAGCAGAAGACCGCGAACTGAAAAACCACTTGCTGAAAAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAAGCTAGGCAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAATTGGTTTATCAATCAAAGGAAGAGACACTGGAAACCATCTGAAGATATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCAGCTCTTTATATGGATGGTCACTACATGGCCGATGGTCCCTACCGTCTAGGGCCATAG	1161	0.3885	MEEYTNNPNQNQNQNQSSRPNFLYSIGSGNNQHQNQHHNNQIPMNMFHVQSSGSDHCFQQQHTAVKTEANSSSQLHTPIFHYPNLMRTNIIPHNNIMHNNNHHQGGGGGGGGGSPSSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKVGAPPDVVARLVAARQEFEARQRSSVNSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRMETQLNTLCNGPLRIFPPEDKNEGADSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g00446	386	Gene3D	-	285	358	-	-
	Trre2g00446	386	Pfam	KNOX2 domain	179	224	IPR005541	GO:0003677\|GO:0005634
	Trre2g00446	386	SMART	HOX_1	290	355	IPR001356	GO:0003677
	Trre2g00446	386	CDD	homeodomain	300	352	IPR001356	GO:0003677
	Trre2g00446	386	ProSitePatterns	'Homeobox' domain signature.	326	349	IPR017970	GO:0000981\|GO:0006355
	Trre2g00446	386	SMART	ELK_2	268	289	IPR005539	GO:0003677
	Trre2g00446	386	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	44	358	-	-
	Trre2g00446	386	SUPERFAMILY	Homeodomain-like	289	363	IPR009057	-
	Trre2g00446	386	Pfam	ELK domain	268	289	IPR005539	GO:0003677
	Trre2g00446	386	ProSiteProfiles	'Homeobox' domain profile.	288	351	IPR001356	GO:0003677
	Trre2g00446	386	MobiDBLite	consensus disorder prediction	1	38	-	-
	Trre2g00446	386	ProSiteProfiles	ELK domain profile.	268	288	IPR005539	GO:0003677
	Trre2g00446	386	FunFam	Homeobox protein knotted-1-like 2	293	355	-	-
	Trre2g00446	386	MobiDBLite	consensus disorder prediction	96	122	-	-
	Trre2g00446	386	MobiDBLite	consensus disorder prediction	225	262	-	-
	Trre2g00446	386	Pfam	KNOX1 domain	124	166	IPR005540	GO:0003677\|GO:0005634
	Trre2g00446	386	Pfam	Homeobox KN domain	308	347	IPR008422	GO:0003677\|GO:0006355
	Trre2g00446	386	SMART	KNOX1_2	123	167	IPR005540	GO:0003677\|GO:0005634
	Trre2g00446	386	SMART	KNOX2_2	174	225	IPR005541	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g00446	Trre-Chr2	3630925	3636864	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g00446	54	386	Homeobox Transcription Factor Family	AT4G08150	68.116	3.78e-151	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Trre2g00446		KNOX2	8.6e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g00446	-		-	gmx:100807602	540.421