Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00445 ATGAATTTTGATGATATCTCCAACACAAGTTTTCATGTTGATCTTGATCTTGGTCTTGCCCTTCATGATCAATATTTTGATGGCCATAGGAAGAGAGAAAGCAAGAAAAAAGAGGAGAATCCATCAAAATATAATAAAGCTTATCCATCTCTTACATTAGGACCATCAAATGAAGAGAATGAAGAAAATACTAATATTATTCTAGATTCAGCTTCAAAGATTGAGTCTTGTGATCAAAATTTACTTACTTCTCCAAGCATAGAGTCTTCATTTTCGAACTCAACAAGCATGAAGAAGGAGAAAGGTGAAGAACTTGAGATAGAGATTGAGAATGTTCCAATTACAAAGATTGGAAATGTTGATGAAGATGGTAATCCAAGGAAGAAACTTAGGCTCACAAAAGAACAATCAGAAGTATTAGAGGAAAATTTCAAAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGCATTAGCACAAAAGCTGAATCTACATGCAAGGCAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAACTGAAACAAACGGAATCAGATTTTGAAGAACTAAAGAAGTGTTGCGAAACTTTAACAGAAGAAAACAAGAATTTGCAAAAGGAGCTACAAGAATTAAAGTCAATGCAAACAGTGTCAACAACTACAACACCTTTTTATGTGCAGATTCCAGCAGCAACACTTACAATATGTCCTTCTTGTGAGACAATTTGTGATGGTAACAACAACAATGATTACCCACCTACAACAACATTGTTTATTGGCTCAAAGGCTCATGGTCTCTATGAAAATTAA 816 0.3493 MNFDDISNTSFHVDLDLGLALHDQYFDGHRKRESKKKEENPSKYNKAYPSLTLGPSNEENEENTNIILDSASKIESCDQNLLTSPSIESSFSNSTSMKKEKGEELEIEIENVPITKIGNVDEDGNPRKKLRLTKEQSEVLEENFKEHSTLNPKQKQALAQKLNLHARQVEVWFQNRRARTKLKQTESDFEELKKCCETLTEENKNLQKELQELKSMQTVSTTTTPFYVQIPAATLTICPSCETICDGNNNNDYPPTTTLFIGSKAHGLYEN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00445 271 Gene3D - 118 189 - -
Trre2g00445 271 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Trre2g00445 271 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Trre2g00445 271 SUPERFAMILY Homeodomain-like 123 184 IPR009057 -
Trre2g00445 271 SMART HOX_1 125 187 IPR001356 GO:0003677
Trre2g00445 271 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Trre2g00445 271 MobiDBLite consensus disorder prediction 45 60 - -
Trre2g00445 271 CDD homeodomain 126 184 IPR001356 GO:0003677
Trre2g00445 271 Coils Coil 175 219 - -
Trre2g00445 271 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 252 - -
Trre2g00445 271 MobiDBLite consensus disorder prediction 30 60 - -
Trre2g00445 271 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Trre2g00445 271 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00445 Trre-Chr2 3614669 3624318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00445 121 244 Homeobox Transcription Factor Family AT4G37790 71.200 1.95e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre2g00445 Homeodomain 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00445 K09338 - gmx:100807072 285.034