Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00444 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATACTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTTCCACAAAAAATTGGTTTGAAGCGTTGTGGAAAGAGTTGTCGTCTAAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCATGGTGGTTTCTCCGAAGAAGAAGATAACATTATTTGTAGTCTTTACATTAGTATTGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAATTATTGGAACACAAGGTTGAAAAAGAAGCTTTTGGGAAAACATCGTAAAGAACAACAACAAGCACGTAATAGAGGCAATAATGGTGTTATTATTAAGCAAGAAAGCAATATTAATCATAGTGATCAATATTCCTTATCAAATTTGGTTCAAGAACAACCATATTTACCACATGTAATGCAAAATTTGCTATCAACACCTCCACCACCGCCATCGCTACCGCCACCAATGTTGTCATCATACACAAACCAAGGCTTCAATGATCAAGATTCTATTAGAAAACTACTTATCAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATCCTACTACTAATAATAGCTTTGATGGTTTGAATATTCCATTCTCAAATGCTACTTCTTCATCTCATGAACAAGTTTATGATCAAGAACATGTTGGTTCTTCTACTTGTGTTAATTCTTCCAATGGTAACAATAGTAATAACCAAGTACAATTTGTACAAAATAGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGAAAATTTATTCAAGAAATTGATCATATGGTATCTACTACTTATCCACAAAGATTTGATGGGTTGGAATTCTTTTTTGGCGAAGAAGACATCATGAGTATTGATAATAATAATAATAATAATAAGATAGAAGGTTCTAGTACTAATTGGGGTGAAGCTACAACTTCAAGTTATCATCATCCTCTTGATTCAAAATACCAAGGTTAA 1050 0.3505 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQARNRGNNGVIIKQESNINHSDQYSLSNLVQEQPYLPHVMQNLLSTPPPPPSLPPPMLSSYTNQGFNDQDSIRKLLIKLGGRFSGDYHPNPTTNNSFDGLNIPFSNATSSSHEQVYDQEHVGSSTCVNSSNGNNSNNQVQFVQNSQYFDSVQEEQGKFIQEIDHMVSTTYPQRFDGLEFFFGEEDIMSIDNNNNNNKIEGSSTNWGEATTSSYHHPLDSKYQG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00444 349 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre2g00444 349 MobiDBLite consensus disorder prediction 166 185 - -
Trre2g00444 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre2g00444 349 CDD SANT 71 113 IPR001005 -
Trre2g00444 349 FunFam Transcription factor RAX3 7 68 - -
Trre2g00444 349 FunFam Transcription factor RAX3 70 149 - -
Trre2g00444 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre2g00444 349 PANTHER OS09G0431300 PROTEIN 1 299 - -
Trre2g00444 349 MobiDBLite consensus disorder prediction 169 183 - -
Trre2g00444 349 SMART sant 13 64 IPR001005 -
Trre2g00444 349 SMART sant 67 115 IPR001005 -
Trre2g00444 349 CDD SANT 16 62 IPR001005 -
Trre2g00444 349 Gene3D - 7 68 - -
Trre2g00444 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre2g00444 349 Gene3D - 70 139 - -
Trre2g00444 349 MobiDBLite consensus disorder prediction 318 349 - -
Trre2g00444 349 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre2g00444 349 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre2g00444 349 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00444 Trre-Chr2 3603089 3604719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00444 1 228 MYB Transcription Factor Family AT3G49690 56.596 1.17e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g00444 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00444 K09422 - gmx:778079 362.073