Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00431 ATGGAGTTTCAACATGGAAATGAGAACATTATGACTTCAGAAATGGATATTAGTTCTGTATCCAATATGGCTAAGTCTTCTTCAGAGGTGCCTAATCATCATCATTTCCTGGGTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAGGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCACAATGACTTTTCTAATGCAAATTCAACTTATAACCCTCTTGTTTTGGAGAATCAAGGAATGAGTAGCACCTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGTGATCATGTAGCTAACACATCAGGGTATCCAATTCCACCACAGCATTATAATCACATCAAGGATGCTGGAAACCAAAGTGGACATTTTAATGGTGAGCAATCTCAAGTTGAGGATTCAGTTCATGAGGATGGAGCTACAGGATCTGCACCTGGTAGTGGAAATAGAAGAAAGCGAGGAATTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGTAGTGAAAGATTCTCCAAGGAAGATCTCTGATGGGTCAAAAGAAACTGAAAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAACTAAAGACAACTCTCCGAGTGGGGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTCCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCTGAATTGAACTTTGATGTAGAGCGACTCTTATCAAAGGATATTCTCCAGTCACGCATAGGACTTGGAATTGGTGGATTTGTTCCTGGTATGAGCTCCTCTCATCCATTCCCAAATGCAAGTTTCCAGGGAAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGCAATGGGATATGATTCCAATACAGCACTTGACAATTTGGGTCCCAATGGGAGGTTGAAACCAGAGTTATAG 1236 0.4118 MEFQHGNENIMTSEMDISSVSNMAKSSSEVPNHHHFLGSSAWDNPLVSLSQAHTFGGSSMVSHNDFSNANSTYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGDHVANTSGYPIPPQHYNHIKDAGNQSGHFNGEQSQVEDSVHEDGATGSAPGSGNRRKRGIDQNSTFSPNKNAEGDVVKDSPRKISDGSKETEKKPKVEQSGKQTKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRIGLGIGGFVPGMSSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYAMGYDSNTALDNLGPNGRLKPEL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00431 411 MobiDBLite consensus disorder prediction 121 239 - -
Trre2g00431 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 301 IPR011598 GO:0046983
Trre2g00431 411 Gene3D - 248 322 IPR036638 GO:0046983
Trre2g00431 411 FunFam Basic helix-loop-helix transcription factor 248 320 - -
Trre2g00431 411 Pfam Helix-loop-helix DNA-binding domain 254 302 IPR011598 GO:0046983
Trre2g00431 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 319 IPR036638 GO:0046983
Trre2g00431 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 153 362 IPR024097 GO:0006355
Trre2g00431 411 CDD bHLH_AtBPE_like 241 326 - -
Trre2g00431 411 MobiDBLite consensus disorder prediction 181 195 - -
Trre2g00431 411 SMART finulus 257 307 IPR011598 GO:0046983
Trre2g00431 411 MobiDBLite consensus disorder prediction 143 158 - -
Trre2g00431 411 MobiDBLite consensus disorder prediction 199 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00431 Trre-Chr2 3499146 3501999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00431 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.299 3.73e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g00431 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00431 - - gmx:100794464 557.37