Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00424 ATGGATCTTGGTGGTGTGAGTTTAGATGGGTTAATTAGTTCAGATCCTGAACAAAAGAACAAATGGTATAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGCTTCAAACTTGCAAAAACTGATCAACAACAACAACAGCAGAGAAACTCTGTTTCACTTTTGAGATCTAATGCTACAACTATGTTTTCTGATGGTCAACACCAACAACAAATGCTTAGTTTTTCAACTCCAAATCCAAAAACAGATTCTTTTTTACTTGACAAAACAACCCAGAATGCTGCATTGTCTTATGCTTATCATCCATTGTCTGGTTATAACAGAAACACAGGTTATAGTTCTGGAAGCATGCATGGAGGTTTAAGTGGTGTTAGAGGACCATTTACACCTTCACAGTGGATGGAACTGGAACATCAAGCCTTGATCTATAAGTATATTACTGCTAATGTTGCTGTACCTCATCATTTGCTTATTCCTATAAAAAAAGCTCTTGATTCTGCTGGCTTATCTAGCTACTCAACTGCACTCCTCAGATCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATAGTACAGCTACTACTAATGCTACTTCTACCATTACTCAAAGTGGTTCATCGAAGCAAATCAATGTTGCTGCTGCTGTTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAATACTGCTTCCAATACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAATAGCCTTATCGGACAAGATAACGCTTCTTCTGCTGCCAATACCATCAACAGGATGTTCATGAATAGCAAAGAGAATAACAGCACAAGCGAGAGGATGCAGGATGGTCCTGCGCTGCCAATGCTGCCTCCAACGCTAGAGTTGAAACCAAAGGAAAGTCACCCTTTTATGATTCAAAAGCAGAACATTCCTTATGATGAATCCTCAAGGAACAACGAATTCGGCTTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAACCTCCCACCTTGCTTGGAACCCGAGCCTTTGGTTCATCTTCGCAGAATCCTACAAACCGAGACACAGGCTCTCAAAATTCCCTTAGGCATTTCATCGATGACTTTCCCAAAACACATTCCGATCATCATAACCGCTCAGGTGGTTTTTCTTGGCCAGAACTCGACATGCAGTCAGATAGGATACAACTATCAATCTCAACACCAATGACTTCCTCGGACTTCATGTCGTTCAATTCCTCAGGAACCAATGAAAAGCTCACACTTTCGCCTCTTAGGCTATCAAGGGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAATAGTACTCTCAATAACAACAATGAATCATCAAACCCTAGTACTAATGCTGCTACTAGACAAGGTAATTGGATTCCAATAACTTGGGAGAGTTCTATGGGAGGTCCTCTTGGTGAAGTACTTCATCTTAGTAGTACTATTGCCTATAATGGAAGTGATGATCATTACGGCAACGGTGGTAGCGGCGGCAACAACTCGGCTGCTCTAAATCTTATGACTGATGGTTGGGACAATCACAATAGTCCTCCGATGGGATCATCACCAACCGGGGTGCTTCAAAAGACCGCATTCGGATCACTTTCCAATAGTAGCGCCGGTAGTAGTCCAAGGGCCGAAAACAATAAGACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATAATGCTTCCTTTACTCCTTAG 1968 0.4243 MDLGGVSLDGLISSDPEQKNKWYNGSGLLKQERSGTCTEDELRSFKLAKTDQQQQQQRNSVSLLRSNATTMFSDGQHQQQMLSFSTPNPKTDSFLLDKTTQNAALSYAYHPLSGYNRNTGYSSGSMHGGLSGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIKKALDSAGLSSYSTALLRSNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNSTATTNATSTITQSGSSKQINVAAAVAASPSSSIVVPGGNTASNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNSTSERMQDGPALPMLPPTLELKPKESHPFMIQKQNIPYDESSRNNEFGFVTSDSLLNPSQKPPTLLGTRAFGSSSQNPTNRDTGSQNSLRHFIDDFPKTHSDHHNRSGGFSWPELDMQSDRIQLSISTPMTSSDFMSFNSSGTNEKLTLSPLRLSREIDPIQMGLGVGNSTLNNNNESSNPSTNAATRQGNWIPITWESSMGGPLGEVLHLSSTIAYNGSDDHYGNGGSGGNNSAALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNNASFTP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00424 655 PANTHER GROWTH-REGULATING FACTOR 5 77 486 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre2g00424 655 MobiDBLite consensus disorder prediction 396 435 - -
Trre2g00424 655 Pfam WRC 206 248 IPR014977 -
Trre2g00424 655 ProSiteProfiles QLQ domain profile. 136 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre2g00424 655 MobiDBLite consensus disorder prediction 249 280 - -
Trre2g00424 655 ProSiteProfiles WRC domain profile. 205 249 IPR014977 -
Trre2g00424 655 SMART QLQ_2 135 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre2g00424 655 MobiDBLite consensus disorder prediction 236 280 - -
Trre2g00424 655 Pfam QLQ 136 169 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre2g00424 655 MobiDBLite consensus disorder prediction 587 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00424 Trre-Chr2 3426956 3430457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00424 25 612 GRF Transcription Factor Family AT2G22840 39.379 3.08e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre2g00424 WRC 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00424 - - cam:101496763 986.097