Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00418 ATGTCATCCTTTTATGAAGAGGAATTACCGGTCCAGTTCATGTGTCATTCGGTTCACGAAACCATGTTCACACAAGACGAAATAGAGGAATTATTTTCCCTCATTAACCAACCAGTTGATCCGTCCAGTCCAGAGTCCGGTTCACAAGGGTCAAATCGTGCGGTTTACTCAACACGCGAGAGAAAAATAAGGAGAATGCAATCAAATCGGGAGTCAGCTAGGCGATCTCGTTGGAGAAAGAAGCGACATGTAGAGAACCTCAATAACGATGTGAACCGGTTGAAAATGGAAAACCGAGAACTAAAAAATCAGCTCGGGTTAACCATGCAATACAATCTCATGTTATCCACGGAGAATGAACGTCTAAAATCAGAATCAATGTCACTTTTGGCAAGACTTTTGGATCTATATCGGACTTTAGAGATAATTTCACAATAG 438 0.4132 MSSFYEEELPVQFMCHSVHETMFTQDEIEELFSLINQPVDPSSPESGSQGSNRAVYSTRERKIRRMQSNRESARRSRWRKKRHVENLNNDVNRLKMENRELKNQLGLTMQYNLMLSTENERLKSESMSLLARLLDLYRTLEIISQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00418 145 MobiDBLite consensus disorder prediction 57 73 - -
Trre2g00418 145 MobiDBLite consensus disorder prediction 37 56 - -
Trre2g00418 145 SUPERFAMILY Leucine zipper domain 61 115 IPR046347 GO:0003700|GO:0006355
Trre2g00418 145 Coils Coil 84 104 - -
Trre2g00418 145 CDD bZIP_plant_GBF1 62 110 IPR045314 GO:0003700|GO:0006355
Trre2g00418 145 FunFam BZIP transcription factor 59 110 - -
Trre2g00418 145 Gene3D - 59 112 - -
Trre2g00418 145 SMART brlzneu 57 121 IPR004827 GO:0003700|GO:0006355
Trre2g00418 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 45 143 - -
Trre2g00418 145 MobiDBLite consensus disorder prediction 37 79 - -
Trre2g00418 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 64 79 IPR004827 GO:0003700|GO:0006355
Trre2g00418 145 Pfam bZIP transcription factor 61 106 IPR004827 GO:0003700|GO:0006355
Trre2g00418 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 59 105 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00418 Trre-Chr2 3384734 3385171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00418 20 140 bZIP Transcription Factor Family AT3G49760 38.281 9.26e-19 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g00418 bZIP_1 2.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00418 - - gmx:102668006 170.244