Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00411 ATGGCAGTGTTAACGGACATAGAAGAAGATGAACTCGACGAAGAACCAGGCGAGGTCATCGAATCAGCACCGCCTCAAAAGCTCGGCGAAGAAAGACAACTCACTTCCAACTCCCCAATCAAAAAGAAACTCCTCAAACGCGGTCACGGTTGGGAAACCCCCAATTTCAACGATCATGTTACCGTTCATTATGTTGGAACTTTGCTTGATGGAACCAAATTCGGTTCTACTAGGGATTTTGATTGTCCTGTCACATTTGCACTTGGCCAAGGTGAAGTGTATGCTGGATTGGATGATGGTATTGTCACCATGAAGAAAGGAGAGGTGGCATTGTTCACATTACCTGCTGTTGAGTCTGAAGGCATTCAACGAGACTCCAACTCAGTTGTGCAGTTTGAGGTGGAACTCGTTTCGTGGATCACTGTGGTGGATGTTTGCAAAGATGGCGGAATTATCAAGAAAATTACGGAGAAGGAGAAAGGGAATGATCGGCCTGGTGATCTTGATGAAGTCCTTGTGAAGTATCAGGTGTCACTAGTAGATGGCACTGTTGTTGGAGAAACACCGGAAGGAGGAGTTGAATTCTATTTGAAGGATGGTCATCTTCTTCCTAGATTGCCGAAAGTGATCATGACTATGACAAGAGAAGAGAAGGCTGAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGTTCAATTCAGTTCCGCCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTAATTGCCAACGAGGGTGCAAATGTTACTGTCAGCTACACAGCCATGCTAGAAGATGGCATTGTATTTGAGAAAAGAGGAATTGGTGAAACACAGCCCTTGAAATTCATAACTGATGAGGAACAAGTTATTGCCGGTCTAGACCGAGCAGTGGCAACAATGAAGAAAGGTGAGAGGGCCATAATTAGTATACATCCTGATTATGCGTTTGGAAATGTTGAAGTGAGACAAGAACTGGCTATCGTGCCACCAGGCTCAAAAGTAGTCTATGACATTGAAATGATGGATTTTATTAAGGAGAAAGCACCATGGGAGTTAAATAATAATGAGAAAATTGAGATGGCTGGGAGGAAGAAAGAAGAAGGGAATTTATTATTTAAAAGTGGCAAATATCAGCGAGCATCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCTAGCTAAATCGTTGAGAATTTCATGCTGGTTGAATGGTGCAGCTTGTTGCCTTAAACTGAATGACTTTCCAGGAGCAATCAAACTATGTACTAAGGTACTTGATGTTGAGTTTCACAATGTGAAAGCTTTGTATAGACGAGCGCAAGCATACATAGAGACCGGAGACTTTCTCTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAGAATAGGGAGGTAAAGGTACTCAGGATGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAACTGTATGAAAATATGTTTGCTAGTAAACCAAAGAGATTGAAAGTTGAGAAAGAAGAGGGTGATGTGGTGAAACTAGAAACGGACAATGTCGGTGACAGTGCAGCACCTTCCGATGGTGGTTTAATTATTGATTCTCGCTGA 1692 0.4267 MAVLTDIEEDELDEEPGEVIESAPPQKLGEERQLTSNSPIKKKLLKRGHGWETPNFNDHVTVHYVGTLLDGTKFGSTRDFDCPVTFALGQGEVYAGLDDGIVTMKKGEVALFTLPAVESEGIQRDSNSVVQFEVELVSWITVVDVCKDGGIIKKITEKEKGNDRPGDLDEVLVKYQVSLVDGTVVGETPEGGVEFYLKDGHLLPRLPKVIMTMTREEKAELIVQPQYAFGEKGREAGSGFNSVPPDSVLHVNIELVSFKPVINVIANEGANVTVSYTAMLEDGIVFEKRGIGETQPLKFITDEEQVIAGLDRAVATMKKGERAIISIHPDYAFGNVEVRQELAIVPPGSKVVYDIEMMDFIKEKAPWELNNNEKIEMAGRKKEEGNLLFKSGKYQRASKKYDKAADFVSEDGSFGDDEQKLAKSLRISCWLNGAACCLKLNDFPGAIKLCTKVLDVEFHNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVKVLRMKLKQLQADSDKKDAKLYENMFASKPKRLKVEKEEGDVVKLETDNVGDSAAPSDGGLIIDSR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00411 563 SMART tpr_5 378 411 IPR019734 GO:0005515
Trre2g00411 563 SMART tpr_5 461 494 IPR019734 GO:0005515
Trre2g00411 563 SMART tpr_5 427 460 IPR019734 GO:0005515
Trre2g00411 563 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Trre2g00411 563 PANTHER PEPTIDYLPROLYL ISOMERASE 142 260 - -
Trre2g00411 563 SUPERFAMILY TPR-like 373 523 IPR011990 GO:0005515
Trre2g00411 563 SUPERFAMILY FKBP-like 144 259 - -
Trre2g00411 563 Gene3D - 6 141 IPR046357 GO:0003755
Trre2g00411 563 Gene3D - 262 365 IPR046357 GO:0003755
Trre2g00411 563 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 259 IPR001179 GO:0003755
Trre2g00411 563 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 269 361 IPR001179 GO:0003755
Trre2g00411 563 SUPERFAMILY FKBP-like 265 378 - -
Trre2g00411 563 Gene3D - 142 259 IPR046357 GO:0003755
Trre2g00411 563 Pfam Tetratricopeptide repeat 462 494 IPR019734 GO:0005515
Trre2g00411 563 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Trre2g00411 563 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 265 357 IPR001179 GO:0003755
Trre2g00411 563 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 137 IPR001179 GO:0003755
Trre2g00411 563 SUPERFAMILY FKBP-like 34 150 - -
Trre2g00411 563 MobiDBLite consensus disorder prediction 543 563 - -
Trre2g00411 563 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g00411 563 FunFam Peptidylprolyl isomerase 366 521 - -
Trre2g00411 563 Gene3D Tetratricopeptide repeat domain 366 521 IPR011990 GO:0005515
Trre2g00411 563 MobiDBLite consensus disorder prediction 1 35 - -
Trre2g00411 563 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 140 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00411 Trre-Chr2 3311203 3317254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00411 27 524 Calmodulin-binding Proteins AT3G25230 52.490 2.55e-180 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00411 K09571 - gmx:100798382 814.683