Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00407 ATGGCATTAGTGATGATAAAGCCTCAAAAAAATGATCATCAAGATGCAAATATTATCAAACTTGAATCAGCATATTCTGATTTAGAATCACTTCTTAAATCAACAAAACAAATGGAACAAAACATTGAAACAATGGAAACAAGGTTTGATCTTTTACAAGGATCACTCACAACAGCTACAAGAAGAATACACCCTTTACAATCTTTGTCCATGTCAAGAAAAGCACTTGATACAAGAATCAATAGAGCTATTTCCCCTGCTTTAGCTCTTCTCGAAACATTCAAACTCGCCGAATCTCTTCAAAATAATCTCCTTAACCTCTCTTCGAAACTATCATCCGAAAAAACGCATCAGAAGAGGCTAGAGAAGCTTTTAGATTACATGGATTGTGTTGATCAGTTGAATGAAGCTATTAATTCTATATGTCAAGTTGTTGAGCCAGTGATTATGAGGCTACAAGAAGTTGTTGAGTTTATAAGTAGAACAAAAGCTGCTGATCAATATAGAACACAAAGGTTAAGAGAAGCACTTATTACTCTAAAAGCACTTTATGAAACTGAGGTTGATGAAATGAGATTTGAAGGGTTGTTGGATCAAGCTTTGCTTAATATGCAAGATGAGTTTGAGGCTCTTTTGCTTAAATTGAAGCATAGGAAGTTAGGTGATTTGTCACATATGCAAAATGATGGTGATGATGAAAGTGATGATCATTTGGATGTTAGTTTTGAATTGGGATCTGAGTTGGAAATTGAAGTCTTGAGAAGAATTTCAAATATTCTTGCTGCTAATGATTGCTTGGATATATGCATTGACATCTATGTTAAGGTAAGATACAAAAGGGCTGCAAAAGCACTAATGAAGTTAAACCCTGATTACCTAAGAACATACACACCGGAAGGAATCGATGAAATGGAATGGGAAAACTTAGAAACATCGATAACTCTATGGACACAGCACTTTGAAGTTGCAACAAAGAAGGTTCTTTTATCAGAAAAGAAACTCTGCGAAAGCGTTCTAGGCGAAATCATAGACGGACTAATCCATCCAGAATGCTTCGTAAAAATATCGGACAAGATCATGGCTGTGTTCTTTCGATTCGGAGAAGGTGTAGCCAGAAGCAACAAAGAGCCACAAAAACTCTTCAAACTATTAGACATGTTTGAATCATTGGAGAAACTCAAACCTCATGTACTCGAAATCTTTGATGGTGAATCTGGAGAGGATATCTGCGTGCGGTTTCGTGAACTTGAGAAGCTAATCATTGATGCATCAAGCAAAGTTTTTTGGGAATTTGGATTGCAAATCGAAGGAAACGTCGATGGTTTTCTTCCGCCTCCACAAGATGGTTCTGTGCCGAAAATAGTAAGATATGCTGTTAACTATCTTAAGTACTTATCCACAGAAAATTACAGAACAACAATGGCTAAGGTTCTAAGAACAGAACAAACATGGAAAACCGAGTTGATGTTATCGTCAATAAACGAAACAGACGAGGATTTATTGAACCATGCCATTTGTAATGTAATGGAGGCACTTCAAAGAAACATCGAATCCAAACGTGTGAGTTGTAAGGACAAGATTTTGGTGAATATCTTCATGATGAACACATATTGGTATATGTATATGAGAACAAAGAACACAGAACTTGGTGATTTGTTAGGTGAGAAATACATCAAAGAAAATTACAAAGCAGTGGCAGAAGAATCAGCTTACTTGTATCAGAAGCAAGCTTGGTTGATTTTGGTGAAGATTTTGGAGCATGATAATGATTTAATGGAACAAAAACAAGGGAAAGAAAAAAGCATTGGAAGGTTAGTGAATGAAAAGTTTGAGACATTTTTTAAGTGTTTGAGTGAGGTTTGTGAGAGGCATAGAAGTTTTTATAGTATACCTGATGTTGATTTGAAGGAACAAATGAGGGATTCAACAGTGAAACTTGTTGTGCCAGTTTATGCTGAGTTTTTGGAGTCTTATTCAGGATTGTTGCAAAGGAAAGTTTATCCAAGTCCTCAAAGGTTACAAGGGTTGATTGGAAAAGCTTTTGGTTCTAATCATGATTGGAATTTGAATGGTGGACGAAATTCTGGTTCTTTGGAAACTGATATTAGAAAATCTAGATGA 2121 0.3583 MALVMIKPQKNDHQDANIIKLESAYSDLESLLKSTKQMEQNIETMETRFDLLQGSLTTATRRIHPLQSLSMSRKALDTRINRAISPALALLETFKLAESLQNNLLNLSSKLSSEKTHQKRLEKLLDYMDCVDQLNEAINSICQVVEPVIMRLQEVVEFISRTKAADQYRTQRLREALITLKALYETEVDEMRFEGLLDQALLNMQDEFEALLLKLKHRKLGDLSHMQNDGDDESDDHLDVSFELGSELEIEVLRRISNILAANDCLDICIDIYVKVRYKRAAKALMKLNPDYLRTYTPEGIDEMEWENLETSITLWTQHFEVATKKVLLSEKKLCESVLGEIIDGLIHPECFVKISDKIMAVFFRFGEGVARSNKEPQKLFKLLDMFESLEKLKPHVLEIFDGESGEDICVRFRELEKLIIDASSKVFWEFGLQIEGNVDGFLPPPQDGSVPKIVRYAVNYLKYLSTENYRTTMAKVLRTEQTWKTELMLSSINETDEDLLNHAICNVMEALQRNIESKRVSCKDKILVNIFMMNTYWYMYMRTKNTELGDLLGEKYIKENYKAVAEESAYLYQKQAWLILVKILEHDNDLMEQKQGKEKSIGRLVNEKFETFFKCLSEVCERHRSFYSIPDVDLKEQMRDSTVKLVVPVYAEFLESYSGLLQRKVYPSPQRLQGLIGKAFGSNHDWNLNGGRNSGSLETDIRKSR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00407 706 SUPERFAMILY Cullin repeat-like 125 679 IPR016159 -
Trre2g00407 706 Coils Coil 28 48 - -
Trre2g00407 706 Gene3D Exocyst complex component Exo70 167 687 - -
Trre2g00407 706 PANTHER EXOCYST COMPLEX PROTEIN EXO70 134 674 IPR004140 GO:0000145|GO:0006887
Trre2g00407 706 Pfam Exo70 exocyst complex subunit 316 675 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00407 Trre-Chr2 3289322 3291900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00407 15 669 EXO70 exocyst subunit family AT4G31540 27.729 1.81e-71 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00407 - - aip:107605596 998.038