Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00402 ATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTACCAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCACCACTGCAAAGGAACTCTCAAGCTAAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGATCAATTGTTCAAAAGAACTGGAAGCCTTGAAAAAAGCTTTGAAGGGACACCAAAAATTGCCAAACCAGAAAGAAATAGTGATAATATTGAGAAACCTGCAGCAATTAAAGCCTCAAGTATGTTTGGTGGAACAAGGGACAAATGTTTAGGTTGTCAGAAAACAGTGTATCCAACTGAAAAGGTTACAGTAAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTACTATTAGTCCTTCAAATTACATAGCACATGAAGGAAAACTCTACTGCAAACACCACCATATCCAACTGATCAAAGAAAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGAGAAAAATGCAAAGAATGGAAAAATCACTGGTGATGAAGTTGCAGCTGAAACATGA 597 0.3802 MAFAGTTQKCMACTKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIAKPERNSDNIEKPAAIKASSMFGGTRDKCLGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNAKNGKITGDEVAAET 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00402 198 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Trre2g00402 198 SMART lim_4 110 162 IPR001781 -
Trre2g00402 198 SMART lim_4 9 61 IPR001781 -
Trre2g00402 198 Pfam LIM domain 111 165 IPR001781 -
Trre2g00402 198 Pfam LIM domain 10 64 IPR001781 -
Trre2g00402 198 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trre2g00402 198 CDD LIM2_SF3 111 171 - -
Trre2g00402 198 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Trre2g00402 198 FunFam LIM domain and actin-binding 1 4 74 - -
Trre2g00402 198 MobiDBLite consensus disorder prediction 178 198 - -
Trre2g00402 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trre2g00402 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Trre2g00402 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Trre2g00402 198 FunFam LIM domain and actin-binding 1 105 175 - -
Trre2g00402 198 CDD LIM1_SF3 6 68 - -
Trre2g00402 198 PANTHER OS06G0237300 PROTEIN 4 93 - -
Trre2g00402 198 Gene3D Cysteine Rich Protein 4 74 - -
Trre2g00402 198 Gene3D Cysteine Rich Protein 106 175 - -
Trre2g00402 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00402 Trre-Chr2 3264821 3266426 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre2g00402 LIM 4.6e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00402 K09377 - gmx:100499947 385.956