Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00396 ATGTTGTGTGCTTGTTCTGGAGAGCAGTACAAGTTTGAAGAGGCTCCACAGTCACCGGATTCCCTAGCAACAAGGGATTTCTCTGCCAGTGGACTATCTTCAAGAACTGGAGATTGGGATTCCAGATTGAATGACAATCAAGTTGAAGATGTTGAAACTACTCTAAAAGAAGCTATCTCATTAACCTATGAGGAAGCTAGAGCTTTGTTGGGGAGGGTTGAATATCAAAAAGGGAACTTTGATGCTTCCCTTCAAGTGATTCAGGGAGTTGATATCAGTTCATTGACCCCAAGGATGATCAGGGCTATATCTGAAAGAAACAAGCTAAGAAAACCTCGTTCGAAGGCGGTTACTGTGCTTCCTAATTTGATGTCAATGCATTCAGTAAGCCTGCTAATTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAACTTAAGCGACCCAAAGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACAGTTGAATCAGCTCTTCCTAATGGAATGCCTGATGATATAGGTGAAGACTGTAAGTTGCAGGAATGGTTTCACAGAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCTTATCGGCGTGCTCTGGTCAAGCCTTGGAATTTGGAGCCGAAGAGGTTGGCATGTCTACAAAAGGATTTAGCTACCACACTACTCTATGGTGGTGTTGAAGTAAACCTACCTTCTGACTTGCAAGTGAATGGTCCAACAAAACCAATGAGTAACATTGAAGAAGCGATACTTTTGTTATTGATACTATCAGGAAAGATGGCAGTTCAAGAAATAGATTATGATGCTGAAATAACCGATCATCTTACATTTGCACTTTCAGTTACGGGGATGTTTGAACCTTTGGCAGAGTGTGTAGAGCAGATCCTACCAGGTATCTTTGGTCGAGCCGAGAGGTGGTACTTTCTCGCTCTTTGTTACAGCGCTGCAGGACAGAATGAAGCAGCGTTAAACCTTTTGAGAAAAGCTTGTGGTAGTTCTGAATCAGAGCATATACCTCATTTTGCTTCATATTTGTTTGGTGCAAAACTGTGTTCCCAAAATCCAATTCATGCTCATGAAGGCATCAAATTTTCAAAGCAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTTTGGTTCAAGGCCAACAAATTCTCGGTGTTTGTTACGGGGCTGCAGCTAGAACATCTGTAGTGGATTCTGAAAGAATTATATTTCAAAACGAGTCTTTGAACTTTCCAAACAAAGCAGCTATAACTGGAAGCGATGATGCAGAAGTTATTTTCAGCCTTGGACTGGAAAATGCAGTTCAGAGGAATCTAGATGCAGCATATCAAAACATAATGAGGTACTCAGATATGACAGCTGGAAGTTCTACAAGAGGTTGGAAGCTGTTAGCGCTCATCGTGTCTGCACAACAGAGGTTTAAGGATGCAGAAACTATTGTTGATTTTGCTTTAGACGACGCTGGTAGCCTAGATCAGTTAGAACTACTAAGATTCAAAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAACAGCCAAAAAGGAGCTTTTACTTCAAGCCAAGAACTCTGAGTTTGATCGAGCAAAAATATTCAAGGATGAGGCATTAACGGAGCAAAAGTTGGAAATGGAAGTGTGGCAAGATTTAGCAACAATTTATACAGATCTTAATTCTTTTCTTAATGCAAAAGCTTGTGTTGATAAAGCCCAATTACTTGAGTTTTTCTCTCCGAGAAGTTGGCATGTTACAGGTAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCATATTCAATCTCATTGTCAATAGAACCTGATTATATTCCTAGTATCAATTCAACTGCAAAGTTGTTGATTAACCTTGGTATGGAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACTATGACGCGTGGTTCAATCTTGGAGTAGTTTCGAAAATGGAAGGTTCCTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGTCGCTTTCAAATCCAGTGCAAAAGTTTGAGTGA 2154 0.402 MLCACSGEQYKFEEAPQSPDSLATRDFSASGLSSRTGDWDSRLNDNQVEDVETTLKEAISLTYEEARALLGRVEYQKGNFDASLQVIQGVDISSLTPRMIRAISERNKLRKPRSKAVTVLPNLMSMHSVSLLIEAILLKAKSLEELKRPKEAAKECRIILDTVESALPNGMPDDIGEDCKLQEWFHRALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEPKRLACLQKDLATTLLYGGVEVNLPSDLQVNGPTKPMSNIEEAILLLLILSGKMAVQEIDYDAEITDHLTFALSVTGMFEPLAECVEQILPGIFGRAERWYFLALCYSAAGQNEAALNLLRKACGSSESEHIPHFASYLFGAKLCSQNPIHAHEGIKFSKQVIDLAKHQNEHFLVQGQQILGVCYGAAARTSVVDSERIIFQNESLNFPNKAAITGSDDAEVIFSLGLENAVQRNLDAAYQNIMRYSDMTAGSSTRGWKLLALIVSAQQRFKDAETIVDFALDDAGSLDQLELLRFKAVLQIAQQQPKQAIETYRTLLTVITAKKELLLQAKNSEFDRAKIFKDEALTEQKLEMEVWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHVTGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLINLGMESLPLARSFLMNALRLEPTNYDAWFNLGVVSKMEGSLQQAADCFQAAYELSLSNPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00396 717 SUPERFAMILY TPR-like 424 601 IPR011990 GO:0005515
Trre2g00396 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Trre2g00396 717 MobiDBLite consensus disorder prediction 21 40 - -
Trre2g00396 717 MobiDBLite consensus disorder prediction 16 40 - -
Trre2g00396 717 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
Trre2g00396 717 SUPERFAMILY TPR-like 552 708 IPR011990 GO:0005515
Trre2g00396 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Trre2g00396 717 SMART tpr_5 133 166 IPR019734 GO:0005515
Trre2g00396 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Trre2g00396 717 SMART tpr_5 317 350 IPR019734 GO:0005515
Trre2g00396 717 SMART tpr_5 511 544 IPR019734 GO:0005515
Trre2g00396 717 Gene3D Tetratricopeptide repeat domain 421 714 IPR011990 GO:0005515
Trre2g00396 717 Gene3D Tetratricopeptide repeat domain 35 344 IPR011990 GO:0005515
Trre2g00396 717 SUPERFAMILY TPR-like 133 463 IPR011990 GO:0005515
Trre2g00396 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00396 Trre-Chr2 3227018 3230843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00396 1 716 Calmodulin-binding Proteins AT1G27460 56.944 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00396 K21843 - gmx:100799086 1112.83