Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00394 ATGGTCTACAATGAGAAGTTGAATCTGGAATCCAAGTTCGATGCTATTGCTGATATAGTTCCCGGTAATGAAAATTTCCGTATAAAGGTAAGGGTTGTTCGTGTATGGAAGGTTCCCGCTTTCCTCAATCCGAGTGAGTCGGTGTCGCTTGAAATGGTTCTTATTGATGAAAAGGGTGGTAAGATTCATGGTTCTATAAGGAAGCAGCTTATTTATATGTTTGAATCCAAAATAGAGGAAGGCCAGATCTATGAGATCTCGGGTTTCTCTGTTTACCCCGAAAGTGGATTTTATCGGACCACCCTTCATCCGTACAAGATTGGGTTTCAACTGAAGACAAAATTGAAGAAGGGTGAAAGTGATAGCATATCTGAGTATGGACTAAGTCTTAGTGACATTGGCGAAGTGTTATCTCATACGAATGGCTATGAGTATCTGGTTGATGTGATTGGTGTCATGACTGGTATGTCCGTGGATAGGGAGTATGTTAGGGATGGTAAGATCACAAAGATGGTTGTTGTTGAGCTTACGGATCATAGTGGCAAGTGTGAATGCGCATTGTTTAGTGACTACGTTGATGAGCTCAGGAAGAAGATGGGAAAATCTGCAACTGGGCTGCCTATTGTAGTTGTACAATTTGCAAAAGTGAAGATATTTAGAGATAAGGTATCCATCCAAAATGTTATTAATACTACCAGAATTTTGGTTAATCATGAAGTGTTCCAAAAAATGTAA 735 0.3973 MVYNEKLNLESKFDAIADIVPGNENFRIKVRVVRVWKVPAFLNPSESVSLEMVLIDEKGGKIHGSIRKQLIYMFESKIEEGQIYEISGFSVYPESGFYRTTLHPYKIGFQLKTKLKKGESDSISEYGLSLSDIGEVLSHTNGYEYLVDVIGVMTGMSVDREYVRDGKITKMVVVELTDHSGKCECALFSDYVDELRKKMGKSATGLPIVVVQFAKVKIFRDKVSIQNVINTTRILVNHEVFQKM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00394 244 CDD RPA1_DBD_A_like 49 114 - -
Trre2g00394 244 SUPERFAMILY Nucleic acid-binding proteins 130 239 IPR012340 -
Trre2g00394 244 Pfam Domain of unknown function DUF223 51 119 IPR003871 -
Trre2g00394 244 Gene3D - 12 117 IPR012340 -
Trre2g00394 244 SUPERFAMILY Nucleic acid-binding proteins 12 120 IPR012340 -
Trre2g00394 244 Gene3D - 122 242 IPR012340 -
Trre2g00394 244 CDD RPA1_DBD_B_like 148 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00394 Trre-Chr2 3181513 3182654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00394 19 223 Core DNA Replication Machinery Family AT4G19130 24.057 1.29e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00394 - - tpra:123904946 325.479