Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00393 ATGGGAACGGAGAGTTACACTTACATGGGACGGAGTTTCAACGAATTCACCATCAACGACGATTCTACTTCTTCAGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTCAATCCCGACGACTCCTTATCGCCTGTGCTTCCGAAAATTCAGATGATCTCATCCGTCAACTTGTTTCCGATCTTCACTCCGATTCAATTGAAGAACAAAAACAAGCCGCCATGGAAATCCGATTACTCGCGAAAAATAAACCGGAAAATCGAATCAGAATCGCTAAAGCCGGCGCAATTAAACCTTTAATTTCACTCGTTTCTTCACAAGACCTTCAACTTCAAGAATATGGCGTCACCGCAATTTTAAATCTCTCTTTATGCGACGAGAATAAAGAGTTAATAGCTTCTTCAGGAGCGATTAAGCCTCTAGTTAGAGCGTTAAACTCAGGAACTTCAACTGCGAAAGAGAACGCAGCGTGTGCGTTGCTTCGTTTATCTCAGGTGGAAGAGAACAAATCAGCTATTGGAAGATCCGGTGCCATTCCGTTATTAGTGAACCTTCTAGGAAGCGGCGGAATCCGCGGGAAGAAAGATGCATCGACGGCGCTGTACACGCTGTGTACAGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCAGGAATTATGAAGGTTTTGGTTGAGTTAATGGCGGATTTTGAATCGAATATGGTGGATAAATCAGCGTATGTTGTTAGTGTATTGGTGTCGGTGCCGGAGGCAAAGACGGCGCTGGTGGATGAAGGTGGCGTTCCGGTGTTGGTAGAGATTGTGGAAGTTGGATCGCAAAGACAGAAAGAAATCGCGGCGGTTATTCTGTTACAGCTTTGTGAGGATAACGTGGCTTATCGATCCATGGTGGCTCGCGAAGGTGCGATTCCACCTTTGGTTGCTTTGACTCAATCGGGCACCAATCGCGCAAAACAAAAGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACACGTACTACATCAGAAATTACATATGAACCCTAG 1053 0.4558 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSQSRRLLIACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKSAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKTALVDEGGVPVLVEIVEVGSQRQKEIAAVILLQLCEDNVAYRSMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRTTSEITYEP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00393 350 FunFam U-box domain-containing protein 4 45 349 - -
Trre2g00393 350 Gene3D - 36 198 IPR011989 -
Trre2g00393 350 SMART arm_5 172 212 IPR000225 GO:0005515
Trre2g00393 350 SMART arm_5 90 130 IPR000225 GO:0005515
Trre2g00393 350 SMART arm_5 213 253 IPR000225 GO:0005515
Trre2g00393 350 SMART arm_5 296 336 IPR000225 GO:0005515
Trre2g00393 350 SMART arm_5 131 171 IPR000225 GO:0005515
Trre2g00393 350 SMART arm_5 254 294 IPR000225 GO:0005515
Trre2g00393 350 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Trre2g00393 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Trre2g00393 350 Gene3D - 200 349 IPR011989 -
Trre2g00393 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Trre2g00393 350 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Trre2g00393 350 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Trre2g00393 350 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Trre2g00393 350 SUPERFAMILY ARM repeat 57 332 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00393 Trre-Chr2 3163188 3165037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00393 25 338 U-box Gene Family AT2G23140 47.531 6.23e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00393 - - gmx:100797550 583.948