Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00387 ATGGAACCTATAGTAGGAGCTTTCCCTGATGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGAGAAGATGATGGATTGAACAATGTAACACAATCCACATTTTACTCTGCTGAAAATGAGTGTATGGTTTATTCTTTTGATCATATCTCAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACTAATCAATATTTTAGTTATCCTAATCAAGCATTATTAGAAAATAATGTTAATACTTGTATATCCATGGATGAGAATTTTTTTGCTTCATTTGTCACACCCTTTAATGAGATTATTATGGAAGAGAATGTGACATTGAATGAAGATGCTGCTGGAAGTGTTGATCATAATTTGGAGAAAAATGATTACACTACTCAAATAATGGAACATGTTGATTTTCCAAACAAGAATGAATTGCAAATGCAGCTCAAAAGGAAACTTGATGTAATAGAAGAAAAATTAAACAAGAAATCCGAGAATCCAAAGAAAAAATCCCGCATTTTAAAAGATGGGCAAGGATGTATGAAAAATGCAAGGTCAAAGAAGAACTTACAAAAAGTTGCTAGCAATGAAGAGATTGCAGAAGATATTGATAATGGAGGATCAAATGAAAATAGTTCTAATAGTAACATTTATGAGGATGAAAATGGTTCTCAAGAAAATAGTGGAGGAACCACTCTCAACTCAAATGGGAAGACAAGAGCTAGCAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGCGAATAAATGAACGACTAAGAATCCTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATTAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTGAACAATTCTCTACCACTATGA 1068 0.3333 MEPIVGAFPDGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGEDDGLNNVTQSTFYSAENECMVYSFDHISNSNYISQSQENSYNSNSSASDDTNQYFSYPNQALLENNVNTCISMDENFFASFVTPFNEIIMEENVTLNEDAAGSVDHNLEKNDYTTQIMEHVDFPNKNELQMQLKRKLDVIEEKLNKKSENPKKKSRILKDGQGCMKNARSKKNLQKVASNEEIAEDIDNGGSNENSSNSNIYEDENGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNNSLPL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00387 355 Coils Coil 168 192 - -
Trre2g00387 355 FunFam Basic helix-loop-helix transcription factor 272 329 - -
Trre2g00387 355 MobiDBLite consensus disorder prediction 186 202 - -
Trre2g00387 355 MobiDBLite consensus disorder prediction 186 282 - -
Trre2g00387 355 SMART finulus 277 326 IPR011598 GO:0046983
Trre2g00387 355 MobiDBLite consensus disorder prediction 231 275 - -
Trre2g00387 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 336 IPR036638 GO:0046983
Trre2g00387 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Trre2g00387 355 Gene3D - 273 329 IPR036638 GO:0046983
Trre2g00387 355 Pfam Helix-loop-helix DNA-binding domain 281 321 IPR011598 GO:0046983
Trre2g00387 355 CDD bHLH_AtIND_like 272 334 - -
Trre2g00387 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 90 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00387 Trre-Chr2 3122505 3124102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00387 212 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 67.153 4.82e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g00387 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00387 - - cam:101488422 401.364