Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00386 ATGGCTCTAGAAGCACTTAACTCACCCACTTCTACTACCCCTAAATTCGATTCTCCATCTCTACCATGGACTAAACGTAAACGTTCTAAGCGTTCACGTTCATGCACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTTGCTCATGGCAAAACCAACGCCCATGATTTCAACCCGCTCCCGGTAATTGCTTCATCCGCTGACAACAACAACGGCAGCAACAAACATAGTTACAAATGTTCTGTTTGCAACAAAGAGTTTTCTTCTTATCAAGCACTTGGTGGACACAAAGCAAGTCACCGGAAAAACTCCACCGCCGGCGGTGATGAACAATCAACTTCCTCAGCCGCCACCACCACAAGCTCCGCAAATACCGCCGTTGGTAACGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAATCGTTTCCGACCGGACAGGCTTTGGGTGGACACAAACGTCGTCACTACGAAGGTGTTGTCGGCGGTGCTGCTGCTGCAACTGTCTCTGAAGTGGGGTCCACACATACTCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGACAAGGTGGGAGAAGATGAAGTGGAGAGTCCTCATCCTGTTATGATGAAAAAGAAGCCTCGTGTTTTCGTGGTGCCCAAGATTGAGATTCCTATTCTCCAATGA 675 0.477 MALEALNSPTSTTPKFDSPSLPWTKRKRSKRSRSCTEEEYLALCLIMLAHGKTNAHDFNPLPVIASSADNNNGSNKHSYKCSVCNKEFSSYQALGGHKASHRKNSTAGGDEQSTSSAATTTSSANTAVGNGGVRSHECSICHKSFPTGQALGGHKRRHYEGVVGGAAAATVSEVGSTHTRDFDLNIPAFPDKVGEDEVESPHPVMMKKKPRVFVVPKIEIPILQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00386 224 MobiDBLite consensus disorder prediction 106 130 - -
Trre2g00386 224 Pfam C2H2-type zinc finger 79 103 - -
Trre2g00386 224 Pfam C2H2-type zinc finger 136 159 - -
Trre2g00386 224 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Trre2g00386 224 MobiDBLite consensus disorder prediction 95 130 - -
Trre2g00386 224 SUPERFAMILY beta-beta-alpha zinc fingers 78 158 IPR036236 -
Trre2g00386 224 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Trre2g00386 224 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 28 188 IPR044653 GO:0003700
Trre2g00386 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Trre2g00386 224 SMART c2h2final6 136 158 IPR013087 -
Trre2g00386 224 SMART c2h2final6 79 101 IPR013087 -
Trre2g00386 224 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g00386 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 158 IPR013087 -
Trre2g00386 224 Gene3D Classic Zinc Finger 76 158 - -
Trre2g00386 224 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00386 Trre-Chr2 3070167 3070841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00386 1 220 C2H2 Transcription Factor Family AT1G27730 47.984 1.68e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g00386 zf-C2H2_6 2.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00386 - - gmx:100795384 242.662