Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00369 ATGCAGAGAGGATCACTATGGTTACCATTGTCCAACTCCTTAATGGATCATCCAATTCCAATCCAATCTCACTCTTTTGGATGGCATGACACTTGGGCTTTCCTTTTTGCTACTCTCTCCATTTATTTTTGTGTTTCTGCTAGTCTATTATATGGATTTTATGGAGATTCTCGTTTGATTCTTGGTCCAAGTTCATCACGTTTAATAAAAACAAGTTCACTTTTTGTTCAACAAATTGAAGTGACAAATAATTATATTACTACTAATAATGATGATATTCATCTTTATGCTTTCAATGAGAAACCTGAATTAAGTTCTCAAATAAATTGGACTACATCAAAAATTTTAGTTGTTGAAGCTTATACTCGCAAGGGAATTTCTTTGTGGTTAAATAAAGGCTCCACTATTTGTTTGAGGTGGGAAGCAGATGCTAGTAGTTTAAATCAACTTGAAGGGGTAGTTATTAAAGGAGAAAGAAGGTTAGAAAAACTAAAGCCTAAACAAACTACCTTCAACTTTTCAATGCCAATTGCGGTTAGAGAGACTGAAAATGGTAAAGAAGCTGAATACATTGTTGAGGAAGATGATAGGTACCACATTGGTATTCTAAATATGAATGCTAGGAACATAATCTTGACCATGAATGTCAATGTTTCTGCAAAAATATATGATACTACCAAAGCCACAAATATGTGCTCTACTGGGAATGGATCATGCAAACTTGGCGTTTTTTTCCCAATCACATATTATGTAATTCTAACAAAACCAAAAAATGGAAATGATGATGAAGCATGGTATGTTGAAATTTCTTTTATCGCTCGGATTTTTTCCTACATAATACTCTTAGGAGTTTTCATGATTGTGATTTTTATAATATTGAAATGCCTTGGAGCTGGTGATGTAGATGAAGCTGAAGAAGTAACTGAAACCGAACCTCTAATGCAGCCAAATCCAATAACATATGGAACAAATAAATTTCATGAAAAGGAGGAAGAATCAGATGCATCAAGTAGCTCTTCAGAGGAGTTGTATAATGAAAAATTATGTATAATTTGTTATGATGAACAACGAAACTGTTTCTTTGTTCCTTGTGGTCATTGTGCCACTTGCTATGACTGTGCACAAAGGATTATGGATGGGGAGAGCAAAGTTTGTCCTGTATGCCGGAGACTTATTCATAAAGTAAGAAGATTATTCAATAGTTAG 1206 0.34 MQRGSLWLPLSNSLMDHPIPIQSHSFGWHDTWAFLFATLSIYFCVSASLLYGFYGDSRLILGPSSSRLIKTSSLFVQQIEVTNNYITTNNDDIHLYAFNEKPELSSQINWTTSKILVVEAYTRKGISLWLNKGSTICLRWEADASSLNQLEGVVIKGERRLEKLKPKQTTFNFSMPIAVRETENGKEAEYIVEEDDRYHIGILNMNARNIILTMNVNVSAKIYDTTKATNMCSTGNGSCKLGVFFPITYYVILTKPKNGNDDEAWYVEISFIARIFSYIILLGVFMIVIFIILKCLGAGDVDEAEEVTETEPLMQPNPITYGTNKFHEKEEESDASSSSSEELYNEKLCIICYDEQRNCFFVPCGHCATCYDCAQRIMDGESKVCPVCRRLIHKVRRLFNS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00369 401 Pfam Domain of unknown function (DUF4793) 188 292 IPR032010 -
Trre2g00369 401 SMART ring_2 349 388 IPR001841 -
Trre2g00369 401 Pfam Zinc finger, C3HC4 type (RING finger) 346 395 - -
Trre2g00369 401 PANTHER OS05G0521000 PROTEIN 28 400 - -
Trre2g00369 401 Pfam Domain of unknown function (DUF4792) 94 161 IPR032008 -
Trre2g00369 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 401 IPR013083 -
Trre2g00369 401 ProSiteProfiles Zinc finger RING-type profile. 349 389 IPR001841 -
Trre2g00369 401 SUPERFAMILY RING/U-box 339 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00369 Trre-Chr2 2962476 2965788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00369 332 399 C3H Transcription Factor Family AT1G62370 35.294 2.86e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00369 - - psat:127093067 619.772