Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00368 ATGGCTGATCAAGAAAACATTATCCCCACGCGCCGCCCTCAACGTGAAGCAAAGATAAGAGCAGTAGCTGCACTATGTGAACAGCGCAAAAGGAAGCGCGTTGAGCGCGTGGAGCGTGTTGCTCTTGGTGATTTAACCAACGCATCGGGGAAATATGTTTCTGATATTCATAAGCAGAAAAAGAGAAACATTGCCAAATCGAAGCCCGTTGAAGAATCTCCGGCACCGGAAAATTTGGAAGTGAAATCGGTAGTCAAACCGGAAGATCCTCAGTTATGTGGGCCTTATGTTTCCGATATTTACGATTATCTTCGTAATTTAGAGGTTGATCCTAGTAAAAGACCTTTGTCTGATTATATCCTGAAAGTTCAGAGGGATATTAATTCTAGTATGAGGGGTGTTCTTGTGGATTGGTTGGTTGAAGTTGCTGAAGAATACAAGCTTGTTTCGGATACCCTTTATTTTTCTGTTTCATACATTGATAGGTTTTTGTCTTTGAATGATTTAAGTAGACAGAAGTTGCAATTGCTCGGTGTTTCTTCAATGCTGATTGCTTCAAAATATGAGGAGATTAAGCCACCTGAGGTGGAGGACTTTTGCTACATTACCGACAATACCTACTCGAGGGAAGAGGTTTTGGGCATGGAGGCTGATATTTTGAAGGCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAGACATTTCTAAGAAGATTCATCTCTAAAGTTGGTCAAGAGGGCATTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTAGCTGTTACCTTGCTGAGCTCAGTTTGTTGGATTATCATTGTGTGAAGTTCTTGCCTTCTATGGTGGCTGCATCAGTTGTATTTCTCGCACGTTTTATGTTAAGCCCAAAGACTAATCCTTGGAATTTAGCCATCTATCAACTCACCAGATATAAACCAGCTGAATTGAAGGAATGTGTTCTAACCATACATGACTTGTACCTCGGTAGGAAAGGGGGCTCTTTGCAAGCTGTGAGAGATAAATACAAACAACACAAGTTCAAATGCGTGGCAACAACACCCTCTCCGCCAGAGATACCTCTTTCTTTTTTTGAATTTAGAGAGGCAGATCCTTAG 1110 0.4144 MADQENIIPTRRPQREAKIRAVAALCEQRKRKRVERVERVALGDLTNASGKYVSDIHKQKKRNIAKSKPVEESPAPENLEVKSVVKPEDPQLCGPYVSDIYDYLRNLEVDPSKRPLSDYILKVQRDINSSMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSREEVLGMEADILKALKFELGGPTIKTFLRRFISKVGQEGIDASELQFEFLSCYLAELSLLDYHCVKFLPSMVAASVVFLARFMLSPKTNPWNLAIYQLTRYKPAELKECVLTIHDLYLGRKGGSLQAVRDKYKQHKFKCVATTPSPPEIPLSFFEFREADP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00368 369 Gene3D - 99 350 - -
Trre2g00368 369 SUPERFAMILY Cyclin-like 88 227 IPR036915 -
Trre2g00368 369 CDD CYCLIN_AtCycA-like_rpt2 230 345 - -
Trre2g00368 369 FunFam Cyclin A1 217 350 - -
Trre2g00368 369 Pfam Cyclin, N-terminal domain 99 227 IPR006671 -
Trre2g00368 369 ProSitePatterns Cyclins signature. 132 163 IPR006671 -
Trre2g00368 369 SUPERFAMILY Cyclin-like 230 356 IPR036915 -
Trre2g00368 369 SMART cyclin_7 137 221 IPR013763 -
Trre2g00368 369 SMART cyclin_7 234 323 IPR013763 -
Trre2g00368 369 SMART Cyclin_C_2 230 354 IPR004367 -
Trre2g00368 369 Gene3D - 115 228 - -
Trre2g00368 369 FunFam Mitotic cyclin 6 115 215 - -
Trre2g00368 369 PIRSF Cyclin_A_B_D_E 3 358 IPR046965 GO:0016538|GO:0044772
Trre2g00368 369 PANTHER CYCLINS 66 348 IPR039361 -
Trre2g00368 369 Pfam Cyclin, C-terminal domain 230 353 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00368 Trre-Chr2 2956131 2958463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00368 1 363 Core Cell Cycle Gene Families AT5G43080 57.692 1.41e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00368 K06627 - gmx:100791691 531.176