Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00347 ATGAAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACAAATAATATCTCTATAGATAACAATAAGGAGATGAGAAAAGAGAAAAAAGTTATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGTAAATGGGTTGCAGAAATTAGAGAACCAAACAAAAGATCAAGAATTTGGTTAGGTTCTTACATAACTCCTATTGCTGCCGCACGTGCCTATGACACCGCTGTGTTTTATCTTAGAGGTCCTTCTGCTCACCTTAATTTCCCCGAATTATTGTTCAAAGATCAAGAAGAACAAGATGACGATGGTGAACAAAATCAACAACTTGGGAACATGTCTGCTGATTCAATAAGGAAAAAAGCTACTCAAGTTGGTGCTAGAGTTGATGCTCTTGAAATTCATGCTTCTTCAAATAATCATGTTCATGACTCCTCTAATTCTTGTTCTTCTTCTACTACTACTACTACTAATTCTCTCAAACCCGACTTGAATGAGTTTCCAAATCCTGAAGATTATTGA 528 0.3561 MKEDREYCCSMNSRTNNISIDNNKEMRKEKKVMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSAHLNFPELLFKDQEEQDDDGEQNQQLGNMSADSIRKKATQVGARVDALEIHASSNNHVHDSSNSCSSSTTTTTNSLKPDLNEFPNPEDY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00347 175 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 MobiDBLite consensus disorder prediction 140 166 - -
Trre2g00347 175 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Trre2g00347 175 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Trre2g00347 175 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Trre2g00347 175 MobiDBLite consensus disorder prediction 139 175 - -
Trre2g00347 175 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Trre2g00347 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00347 Trre-Chr2 2734973 2735500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00347 30 174 AP2-EREBP Transcription Factor Family AT2G23340 54.667 3.02e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g00347 AP2 4.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00347 K09286 - gmx:547642 201.83