Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00345 ATGAAGGTGCATCAATTCACACGTGGATTTTGGGAGCATGAACCTTCCCTTACACTTGGTTGCAAACGTTTACGACCTCTTGCTCCTAAATTTTCTAATAACACCGATAATCCTACTAATCATACCCCTTCTCTTTCTTTTGATCTCAAGAGTTTCATTAAACCTGAAAGTACTTCCAGAATTAATAATCTTTCTTCCTCTGATCATGATAATAACAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACGCATATTCCAGGAGGGACAAGGTGGAATCCAACACAAGAACAAATAGGAATCTTGGAGATGTTATACAGAGGTGGGATGAGAACACCAAATGCACAACAAATAGAACAGATCACTGTTCAACTTAGCAAGTACGGTAAAATTGAAGGGAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGTCTTGTTCATAGTCCTCGTACTCCCACCACCACACTAGTGTCATCTACCTTTAGTGCCATTACAACTTTGGACAGCTCCAAAAAGGAAGAATTAATGGAAAGAGATCAAGGAGATGATAGTCCATTGAAGAAGAGTAGGAGTTGGCCATTTAAGTACTTGGAAGAGAAAAATTGGTCAATTTGCAAACAAGAGGAACAAAAAACTCTAGAGCTTTTCCCATTACACCCGGAAGGCAGATGA 714 0.3978 MKVHQFTRGFWEHEPSLTLGCKRLRPLAPKFSNNTDNPTNHTPSLSFDLKSFIKPESTSRINNLSSSDHDNNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLVHSPRTPTTTLVSSTFSAITTLDSSKKEELMERDQGDDSPLKKSRSWPFKYLEEKNWSICKQEEQKTLELFPLHPEGR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00345 237 CDD homeodomain 91 152 IPR001356 GO:0003677
Trre2g00345 237 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 237 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Trre2g00345 237 SMART HOX_1 88 155 IPR001356 GO:0003677
Trre2g00345 237 MobiDBLite consensus disorder prediction 59 95 - -
Trre2g00345 237 SUPERFAMILY Homeodomain-like 90 157 IPR009057 -
Trre2g00345 237 Gene3D - 90 157 - -
Trre2g00345 237 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Trre2g00345 237 Pfam Homeodomain 91 150 IPR001356 GO:0003677
Trre2g00345 237 MobiDBLite consensus disorder prediction 76 95 - -
Trre2g00345 237 FunFam WUSCHEL-related homeobox 4 90 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00345 Trre-Chr2 2710206 2711905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00345 1 171 Wox Gene Family AT1G46480 61.111 1.79e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre2g00345 Homeodomain 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00345 - - aprc:113848075 360.147