Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00344 ATGGCGCAGATTCAGGTTCAACATCAAACTCCGGCAACCGTTCCGGCACCTTCGAACGGTGTTGTTACTGCTCCTAACGCGAATCAGTTCGTTACGACGTCGTTGTACGTTGGTGATCTTGATTTGAATGTTAACGATTCTCAGCTTTACGATCTGTTTAATCAGGTTGGACAAGTTGTTTCTGTTAGGGTTTGTAGGGACTTGGCTACGCGTCGTTCACTCGGTTATGGTTATGTTAATTTCACTAACCCTCAGGATGCGGCTAGGGCATTGGATGTGCTGAATTTTACTCCACTGAACAACAAATCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTATTCGGAAGAGTGGCACTGCAAATATTTTTATCAAGAATTTGGACAAGACAATTGACCACAAAGCTTTACATGATACCTTTTCTACTTTCGGACATATTCTGTCTTGCAAGATAGCGACTGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTGCAATTTGAGACTGCTGAATCTGCTCAGAGTGCAATTGATAAGTTAAATGGCATGCTGATCAATGACAAGCAGGTGTATGTGGGTCATTTCCTACGTAAGCAGGACAGAGATAATGATCTTAGTAAAACTAAATTTAATAATGTCTATGTGAAAAACCTGTCAGAGTCATTTTCGGAAGATGACTTGAAAAATACTTTTGGAGAGTACGGCACTATTACTAGTGCTGTTTTGATGAGGGATGCAGATGGTAAGTCGAAGTGTTTTGGTTTTGTCAATTTTGAAAGTCCTGATGAAGCTGCTAAAGCTGTTGAGGCATTGAATGGAAAGAAAGTTGATGACAAGGAGTGGTATGTGGGCAAAGCCCAGAAAAAATCTGAACGGGAGCAAGAGCTGAAAGGTCGGTTTGAGCAGACCATAAAGGAAACTGTAGACAAATATCAAGGTGTGAACCTGTATCTCAAAAACTTGGACGATTCCATTAGTGATGAAAAACTCAAAGAGATCTTCTCCGAGTTTGGCACAATTACCTCATACAAGATTATGCGAGACCCAAATGGAGTCAGCAGAGGATCCGGATTTGTTGCATTTTCAACTCCAGAGGAAGCATCAAGAGCTCTTGGAGAGATGAATGGCAAAATGATTGTCAGCAAACCTCTTTATGTTGCTGTTGCACAGAGAAAGGAAGATAGAAAAGCAAGGTTGCAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTTCACCTTCTGTTGCTCCCCGAATGCCACTCTACCCTCCTGGTGCTCCTGGTATTGGACAACAATTTATGTATGGTCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGATATCAGCAGCAACTTGTTCCTGGGATGAGACCTGGCGGTGGTCCTATGCCAAGCTACTTTGTTCCAATGGTTCAGCAGGGCCAACAAGGTCAGCGTCCTGGTGGACGCCGAGGTCCTGTTCAACAACCCCAGCAGCAATTGCCAATGATGCAGCAGCAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTCCAGGCCGCAACAACATTCAAGATGCCCCCGTGGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTGCCACTCCGTGATGTTGCGTCGCCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCTGAACAGCAGAGGACTATGCTTGGAGAGGCTTTGTATCCGCTAGTAGATCAGCTGGAACACGATTCTGCAGCTAAGGTTACCGGTATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTTATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGAGGAATGTTGCTCAACAGCAAGGCAGCAGCCCGGCTGATCAACTAGCTTCACTCTCTCTCAACGACAATCTTATTTCTTAG 1941 0.4513 MAQIQVQHQTPATVPAPSNGVVTAPNANQFVTTSLYVGDLDLNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDHKALHDTFSTFGHILSCKIATDGSGQSKGYGFVQFETAESAQSAIDKLNGMLINDKQVYVGHFLRKQDRDNDLSKTKFNNVYVKNLSESFSEDDLKNTFGEYGTITSAVLMRDADGKSKCFGFVNFESPDEAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTIKETVDKYQGVNLYLKNLDDSISDEKLKEIFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRKARLQAQFSQMRPVAISPSVAPRMPLYPPGAPGIGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGPVQQPQQQLPMMQQQMLPRQRVYRYPPGRNNIQDAPVAGGMMSYDMGGLPLRDVASPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGSSPADQLASLSLNDNLIS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00344 646 PANTHER RNA BINDING PROTEIN 32 95 - -
Trre2g00344 646 SMART rrm1_1 122 194 IPR000504 GO:0003723
Trre2g00344 646 SMART rrm1_1 34 107 IPR000504 GO:0003723
Trre2g00344 646 SMART rrm1_1 316 388 IPR000504 GO:0003723
Trre2g00344 646 SMART rrm1_1 213 285 IPR000504 GO:0003723
Trre2g00344 646 FunFam Polyadenylate-binding protein 20 118 - -
Trre2g00344 646 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 621 IPR006515 GO:0003723
Trre2g00344 646 SUPERFAMILY PABC (PABP) domain 496 639 IPR036053 GO:0003723
Trre2g00344 646 Gene3D - 544 627 - -
Trre2g00344 646 Gene3D - 1 120 IPR012677 -
Trre2g00344 646 CDD RRM1_I_PABPs 34 113 IPR034364 -
Trre2g00344 646 CDD RRM3_I_PABPs 211 290 - -
Trre2g00344 646 FunFam Polyadenylate-binding protein 203 297 - -
Trre2g00344 646 CDD RRM4_I_PABPs 314 392 - -
Trre2g00344 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Trre2g00344 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Trre2g00344 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Trre2g00344 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Trre2g00344 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Trre2g00344 646 Gene3D - 210 312 IPR012677 -
Trre2g00344 646 Gene3D - 313 413 IPR012677 -
Trre2g00344 646 CDD RRM2_I_PABPs 119 195 IPR045305 -
Trre2g00344 646 SMART poly_2 560 623 IPR002004 GO:0003723
Trre2g00344 646 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Trre2g00344 646 SMART rrm2_1 213 285 IPR003954 GO:0003676
Trre2g00344 646 SMART rrm2_1 122 194 IPR003954 GO:0003676
Trre2g00344 646 SMART rrm2_1 316 388 IPR003954 GO:0003676
Trre2g00344 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Trre2g00344 646 FunFam Polyadenylate-binding protein 544 626 - -
Trre2g00344 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 548 625 IPR002004 GO:0003723
Trre2g00344 646 FunFam Polyadenylate-binding protein 298 403 - -
Trre2g00344 646 Gene3D - 121 209 IPR012677 -
Trre2g00344 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Trre2g00344 646 FunFam Polyadenylate-binding protein 119 202 - -
Trre2g00344 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Trre2g00344 646 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676
Trre2g00344 646 Pfam Poly-adenylate binding protein, unique domain 556 620 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00344 Trre-Chr2 2690556 2694483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00344 1 641 Eukaryotic Initiation Factors Gene Family AT4G34110 69.290 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00344 K13126 - gmx:100784442 1052.74