Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00343 ATGCAAGGGCAGAGAGGCGCAATTGGTTCCTCCTCTGAAACCTTCGAGTTCGATTGTGGATCTACATCAAGTACTGCTGCAGTTGATCAGCACATTTTTTGGAATAATATGCACACTCCGGCTGAAAATCGGATACCTGAATTTATGCTTCCTCCCAGTGATATGAACCAATCTCATGGGAATTCTGTAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGCGAGCCAAGTTCTAGTAATACACAGAACGAAGCTAACAACACTGAGCTGAAAAGGGAGTTAGAATTATCACCTCCGATAAATGGTGATATAGCTGGTCCAAGACTAGAAGAAAGGCACTTCGAACCAACTAATGCATTTTCATTGGATAATGTCAATACAGGTCCTATGTATATGTGCAGCTCCAATTCTCATTTGGTGCCTCAAAATCTCAACTTAAATGCTGCTTTAGCAGATAATGTTGGTGATAATAATAGCTATCATGTGGAAGTTGATCATTCTAACGTGATCAAATCTAGTGGTCCGCTGAATGAGCATCTTCCACCTCCGATTAGTTCTGGTTCATTTTTGCTTCCTTCTGCAAGTAATAGCATTTTTGTTGGGGATACCGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTGTCTTGTAAAAGAAAGGCAGTTGAAGGAAGTGGTGGACAATCTTCTAACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGAAGTGCTTGGAATACTCTTCCTACTCAGGATTATGCAGGGAGCAGTTTTAACAGATCAGCACCGGCAGAACATGTTACTGCAAGACTTGGCCTTGCTATCGGGGGAGGATCTTCTGAAACCATACCAGAGTCAACTGTTGCAGGAAACTCAGAAAGCTTCCAAAGAAATTTTCGTTTGAGGCTAAACCCTTCAAGCCAACAAATTTCTCTCCCTCAACCCACATTCTCAAACGGGAGCGTGATCAGGAATTCCAGTGTTCCTTCATCTTCTCCAATATTGCAAAGGTTCAACCCTATCGATAATCCTGTGGATTTGAGGTCAGTACAACCGGTAGATCTCATGCTTCCTCAAAGCCAGCCGCTTCTTATTCACGTTCCTTCTTTACCAAGGAGCGCGCAATCAGTTAGGTGGAGCGGTGGTTCTAGCTCAATAAACAACCATTCGTCAAATTCAGTTTTAGGCGTAGATAGGGATAATCAACCACTTGAGGGAGCAAGCTCAAGACCTATGGCTAGAAACATTTTAGATCACCCGGTTTTTGTACCTGCAAATGTACGAAATGCAGCTCGAAATCCAACAAGACCTTCGAGCAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCGTCATCACGGACTGCTCCAAATCCTCCCGCTTTGAATCCATCATCTCTGTCGGCATGGGTATCTCGTCCTAATCCACAGCAGTATCCACGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTCTGAAGGTGGAAGTTCAAGCACCAGCTATTCTTCCTTGCGCGCTCCTTCTGCTTCGTCAGAATCAAGAGGACCGCCATCCGGGACGAATCCTGGATCATCTCCATGGTTGGAGAGGTCAGCTGAGAGTGAATTTGGAGTTCCCTATACCTTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGTAACGTGTTGGGCATGATGCGTAGGGGTGGGAACTTGCGGTTTGAGGATGTTATGATTCTCGACCATTCAATGTTTTCTGGGCTTGCTGATATGCACGATCGACACAGGGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGTATCGGAAATGTGAGTACAGGATTGAATGAGGAGACCATTATGAAACATTTGAAACTGAAGAAATATTCAGTTGATGAATCAGGTTCTCAGAATGAAGCAGAACCCTGCTGTGTTTGTCAGGAAGAGTATAAAAATGAAGATGATATCGGATCGTTGGATTGCGGGCACGATTACCATACCGACTGTATTAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATGA 2124 0.4435 MQGQRGAIGSSSETFEFDCGSTSSTAAVDQHIFWNNMHTPAENRIPEFMLPPSDMNQSHGNSVNHEWQNLSGWSLGEPSSSNTQNEANNTELKRELELSPPINGDIAGPRLEERHFEPTNAFSLDNVNTGPMYMCSSNSHLVPQNLNLNAALADNVGDNNSYHVEVDHSNVIKSSGPLNEHLPPPISSGSFLLPSASNSIFVGDTDGRPGCSLDTRRVSCKRKAVEGSGGQSSNGGSSSYSQHTDGSAWNTLPTQDYAGSSFNRSAPAEHVTARLGLAIGGGSSETIPESTVAGNSESFQRNFRLRLNPSSQQISLPQPTFSNGSVIRNSSVPSSSPILQRFNPIDNPVDLRSVQPVDLMLPQSQPLLIHVPSLPRSAQSVRWSGGSSSINNHSSNSVLGVDRDNQPLEGASSRPMARNILDHPVFVPANVRNAARNPTRPSSSANLSIPGNVASSSRTAPNPPALNPSSLSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEGGSSSTSYSSLRAPSASSESRGPPSGTNPGSSPWLERSAESEFGVPYTLRSLAAGGEGSSRLVSELRNVLGMMRRGGNLRFEDVMILDHSMFSGLADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKLKKYSVDESGSQNEAEPCCVCQEEYKNEDDIGSLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00343 707 MobiDBLite consensus disorder prediction 434 479 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 226 252 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 380 402 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g00343 707 Pfam Ring finger domain 660 701 IPR001841 -
Trre2g00343 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Trre2g00343 707 MobiDBLite consensus disorder prediction 380 419 - -
Trre2g00343 707 SUPERFAMILY RING/U-box 659 703 - -
Trre2g00343 707 FunFam E3 ubiquitin-protein ligase MBR2 627 705 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 498 536 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 45 92 - -
Trre2g00343 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 216 705 IPR045191 GO:0061630
Trre2g00343 707 MobiDBLite consensus disorder prediction 222 252 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 496 538 - -
Trre2g00343 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Trre2g00343 707 SMART ring_2 660 700 IPR001841 -
Trre2g00343 707 MobiDBLite consensus disorder prediction 435 479 - -
Trre2g00343 707 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00343 Trre-Chr2 2673921 2678161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00343 1 707 C3H Transcription Factor Family AT2G15530 32.846 1.51e-76 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00343 - - psat:127091144 1096.65