Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00342 ATGGCTGGTTCTTCATCTGATGATATTATGCACCAAACACACCCATCTCATGATTCCCAAGATTTCTCAAATTTACTATTCAACCAACTCATGGATCCTTCTTCTTCTTCCTCATCTTTCAATTTTTCTGATCCTTTTCCTAATCCTTCCACCACCATCCCTTACCCTTCTTCTCACTTCACTTCTTCTTCAGCTCAGAATGATGAAGCTTCAGAGTTGCCATCATCAAAAGCTACCCCACCACCACGTTCTTGTTCAAAGAGGAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAACTTCAGCTTCAAGTACAAATGTTAATGGTGAGAAATGGTTATAGCCTGCATCCAATGTCTTTATCAGGAGGACCGCGGCCCACGATGTTTTCTCAGACCGAGTTGTTGAATCTTGATGAGGGTAATATTGGATTTCACAATTCTATCGATACAAACAATGAATGTTTCGCGCGGTCAGGTGTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTATTTTACCCTCGACGACAACTATACCTAATTTTGATGCCTCATCAAGTTTTCAACCCTCTATTAAGGATGTTTTCTGCAACAACATGCCACAACTGATTTTGGATTCGACAAGGATTGGAAAAACTCCTTCTCCAGATGTGTCTTAA 783 0.3895 MAGSSSDDIMHQTHPSHDSQDFSNLLFNQLMDPSSSSSSFNFSDPFPNPSTTIPYPSSHFTSSSAQNDEASELPSSKATPPPRSCSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGPRPTMFSQTELLNLDEGNIGFHNSIDTNNECFARSGVSFPEQCSISNQSVILPSTTTIPNFDASSSFQPSIKDVFCNNMPQLILDSTRIGKTPSPDVS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00342 260 MobiDBLite consensus disorder prediction 1 101 - -
Trre2g00342 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
Trre2g00342 260 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 10 233 IPR031066 -
Trre2g00342 260 Pfam Helix-loop-helix DNA-binding domain 94 140 IPR011598 GO:0046983
Trre2g00342 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 150 IPR036638 GO:0046983
Trre2g00342 260 CDD bHLH_AtPIF_like 90 152 IPR047265 -
Trre2g00342 260 FunFam Basic helix-loop-helix transcription factor 85 148 - -
Trre2g00342 260 SMART finulus 96 145 IPR011598 GO:0046983
Trre2g00342 260 MobiDBLite consensus disorder prediction 1 83 - -
Trre2g00342 260 Gene3D - 86 149 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00342 Trre-Chr2 2665817 2667937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00342 90 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 84.722 2.11e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g00342 HLH 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00342 - - mtr:11414235 392.119