Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00310 ATGGGTAGGAAGAAGAAAGAGAAGAAGATTGATGAGAATATTCATGTAAAGAACTGTTTTGGGGAAACATTTGCAATGAAGGTGCAGGAACATGATACCATCAGTAGTATCAAGAACAGGATTTTTAAAAAACATAATATCCCACCTGATCAACAAAACATAATGTTTTCTGATTCTAGACCAGGTGATTTATCTAACATTCCCAAGTTAGAAGATGCTAAGTTGGCCGGCACAGAACACTCTAAAGAGTGTACCTTAATTTTGACAGAGGGTGATTCTGCAAAATCACATGTTATGATGGGACTTACTGTAGTCAAAAATAGAGAACAGTACGGTGTCTTTCCTCTAATGGGAAAGCCTCCGAATGCATCTAGAGGAAAAATGGAAATGAAAAAGGTGTTGAAAAACAATATTATCAGCAATTTAAGGAGGATTCTTGGCCTAGTTCATAATGTTGATGAGAAGAAAATATATGAGTCTCTAAGATATGGCCACATACTTCTTATGATGGATCAAGATGATGATGGATCACACATTAAAGGGTTGGTGATTAATTTAATATACAACATGTGGCCATCACTGATCCGAACTAAAGATCATAACTTTCTCTCAGAATTCATTACTCCAATAGTCAAGGCCACACATTCTAATCCTGACATGGATAAATCATTTTACACCCTTCAAGCTTTTAGAGATTGGAGACAAGATAACAGCAATGATTTTTCCAATTGGACAGTAAAATACTACAAGGGATTGGGTAGCAGTACTGATTATGAAGCAGTAGGATATTTTGAAAAGATGGATCAAAATCAAAAAAATTTTACTTGGGAAGATGATACGGATAGCAATGCAATAGAGGATGTCTTTGACGAAGCACCGGCAAAAGTTCAAACTCGAAGGGACTGGATCAAAAGTTTCCAAAGTTCTCAGCCCAACAATTATTTGGATCAAAATGTAAAATACATACGATTCAAAGATTTTATCAACGAAGAATACATTTTATATGCTATGGCTACTTTGAAAAGAAGCATTCCATCTATCATGGATGGGCTTGTTCCTGCCCAAAGAAAGATTTTATATTGCTCTATTAAAAAGAATTTGGTCAAAGAAATTAAAGTAAATCAATTTATTGGCTATATTTCTGAAGAAACTGCATATCATCACGGTGAGAAAAGTCTTGCCAAAACAATCATTAGAATGGCACAAAATTTTGTTGGAAAGAATAACATCAATCTTTTGAAACCCATTGGTCAATACGGCACTCGTAACTTGGATGGTAAAGACCACGCTAGTCATAGATATCTAAACACGGAACTTAGTTCTCTTACTAGTTACCTCTTCTGCAATGTTGATAATCATCATGAAATACTTAATTATGATTTGGCTGAAGATGGGAGGACTATTGAACCAAAATGGTTCCTGCCCGTCATTCCTATGATTCTTGTCAATGGTAGCCACGGGGTTGGAATAGGCTGGAAGTCTTTTGTTCCAAAATATAATCCAAAAGATATTATTAAGAATATAAGACGCAAGTTCAATAATGAATCCGCAGAAGAAATGACTCCATGGTATAAAGGTTTTAAGGGGACCGTTGTGGCAAAAAAGGAGGAAGAAGACACGTTGTCATATTATACCAATGGTGTAGTATCCTCTGGAAAACACAAATACACTTACCATATAACAGAGCTACCGATAGGGAAGTCTATTGAAGAATATAAAAAATTCCTACAATCTAGATCAGAAGGGACGTCAACAAAAAAGACTCTCTTTAAGAGTTTTGAACAAATAGGTGACGGTAGAACGGTTGGATTCCACGTAGAATTTATGCCAGAAAAAGCTCCATCCAAAGATGATGATTTAATTAACATCTTAAAATTAAGAACCAAAATTTCAACTGATAATATGCATCTTTATGACACAGATGGTGAAATACATAAGTTCAACTCTGCAAAAGAAATTCTTGAACAGTTTTATGTTGAACGATTGAAGTCCTATGAGACCAGACGTGATGTCATGTTCCAAAACATTGAATCTGATTGGAAGGATTTAAATAACACAAGAGAATTTGTAAAGTTGGCCAGAAGTCAGACATTTGACTTTGTCACAAAAGATAGCAAAGATTTGCAAGAATTTTTTATAGGCCACAATATTGCTGCTGTTTCTCTCCCGTCTCTTTTATCTTTACCTTTAAGTACTTTCCTTAATGAAGGGTTAAAGAAACTTGAAGATAAAATACGAGACAAGGAAGAGGAGAAGAATGCTATTTTTGATAAAACGGAAACTCAATTGTGGGAGGACGACTTGAACACATTTGAAGAAGAGTGGCAGAAAGAAGAAGCAAGTTGGAAAAGTGATACAATGTCACAAGTATGCCCAATTTGTGAACCTGAAGAGGAAATCGATATTGAAGAGGAAATCGATATTGTGCCTAGCGTTAAGCCTAAAAGAACCATCACTCTGCCCAACCGCTATTGA 2475 0.3552 MGRKKKEKKIDENIHVKNCFGETFAMKVQEHDTISSIKNRIFKKHNIPPDQQNIMFSDSRPGDLSNIPKLEDAKLAGTEHSKECTLILTEGDSAKSHVMMGLTVVKNREQYGVFPLMGKPPNASRGKMEMKKVLKNNIISNLRRILGLVHNVDEKKIYESLRYGHILLMMDQDDDGSHIKGLVINLIYNMWPSLIRTKDHNFLSEFITPIVKATHSNPDMDKSFYTLQAFRDWRQDNSNDFSNWTVKYYKGLGSSTDYEAVGYFEKMDQNQKNFTWEDDTDSNAIEDVFDEAPAKVQTRRDWIKSFQSSQPNNYLDQNVKYIRFKDFINEEYILYAMATLKRSIPSIMDGLVPAQRKILYCSIKKNLVKEIKVNQFIGYISEETAYHHGEKSLAKTIIRMAQNFVGKNNINLLKPIGQYGTRNLDGKDHASHRYLNTELSSLTSYLFCNVDNHHEILNYDLAEDGRTIEPKWFLPVIPMILVNGSHGVGIGWKSFVPKYNPKDIIKNIRRKFNNESAEEMTPWYKGFKGTVVAKKEEEDTLSYYTNGVVSSGKHKYTYHITELPIGKSIEEYKKFLQSRSEGTSTKKTLFKSFEQIGDGRTVGFHVEFMPEKAPSKDDDLINILKLRTKISTDNMHLYDTDGEIHKFNSAKEILEQFYVERLKSYETRRDVMFQNIESDWKDLNNTREFVKLARSQTFDFVTKDSKDLQEFFIGHNIAAVSLPSLLSLPLSTFLNEGLKKLEDKIRDKEEEKNAIFDKTETQLWEDDLNTFEEEWQKEEASWKSDTMSQVCPICEPEEEIDIEEEIDIVPSVKPKRTITLPNRY 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00310 824 CDD Ubl_ubiquitin_like 14 58 - -
Trre2g00310 824 Pfam C-terminal associated domain of TOPRIM 206 338 IPR031660 -
Trre2g00310 824 ProSiteProfiles Ubiquitin domain profile. 12 57 IPR000626 GO:0005515
Trre2g00310 824 PANTHER DNA TOPOISOMERASE/GYRASE 20 787 - -
Trre2g00310 824 SMART ubq_7 12 91 IPR000626 GO:0005515
Trre2g00310 824 ProSitePatterns DNA topoisomerase II signature. 88 96 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 SMART topIV4 322 766 IPR002205 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 Coils Coil 731 758 - -
Trre2g00310 824 SUPERFAMILY Type II DNA topoisomerase 63 780 IPR013760 GO:0003918|GO:0005524
Trre2g00310 824 Gene3D Topoisomerase II, domain 5 344 647 IPR013758 GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265
Trre2g00310 824 Pfam Toprim domain 86 190 IPR006171 -
Trre2g00310 824 Pfam DNA gyrase/topoisomerase IV, subunit A 342 768 IPR002205 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 Gene3D - 209 255 - -
Trre2g00310 824 FunFam DNA topoisomerase 2 70 250 - -
Trre2g00310 824 FunFam DNA topoisomerase 2 344 526 - -
Trre2g00310 824 Pfam Ubiquitin family 14 57 IPR000626 GO:0005515
Trre2g00310 824 Gene3D Topoisomerase, domain 3 649 790 IPR013757 GO:0003677|GO:0003918|GO:0005524
Trre2g00310 824 Gene3D - 527 633 - -
Trre2g00310 824 SMART topII5 1 308 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS DNA topoisomerase II family signature 86 100 - -
Trre2g00310 824 PRINTS DNA topoisomerase II family signature 178 195 - -
Trre2g00310 824 PRINTS DNA topoisomerase II family signature 246 262 - -
Trre2g00310 824 PRINTS DNA topoisomerase II family signature 160 176 - -
Trre2g00310 824 Gene3D - 13 60 - -
Trre2g00310 824 Gene3D - 70 343 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 84 91 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 370 393 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 179 194 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 252 264 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 642 668 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 417 439 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 135 148 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 560 574 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 PRINTS Topoisomerase II signature 69 79 IPR001154 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre2g00310 824 SUPERFAMILY Ubiquitin-like 13 59 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00310 Trre-Chr2 2464347 2468391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00310 14 88 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.158 1.47e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00310 K03164 - egr:104414246 605.134