Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00272 ATGGCCTGTGAGTGTAAGGGAAAGCTAAATGTGAGAAAACCCCAGTTCTACCAGGTCTTTTCCCCTTCTTCCACCTCTCAATCTCTGAGAATTCCAGATGGTTTTGTCCGTCAAATGGAGGGCACCACACGTGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCAGGACAATTATCTATTCTTGCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTAGAATATGGCGACCTTTTGGTTTTCCGATACGAGGGTCACCTGCATTTCACTGTGCAAGTGTTTGGTGAGAATGCATGTGAAAAAGAAGCCGCATTTCATACTGAATGCAATCTAAATTCATCTAACTTCGATAAGGAGACTTCTTTGGATGTTGTTGGTGTTCGGAAGAATATGAGGTGCGACACCATTGAGAACCAGGAGCTTGAGCTGGGTATTGCCGGTAGAGATCTATCCAAATATGAGGTAGTTAAACCAATTAGTATGATCAGAGAAACAGAAGAAACCCACAAAGAATGTTCAGCTAGTACTGTCCCTGTTCCTTTTCACACAGGAAATAGTAATGAAGATCAAGCTTCGCTGTCAACGCTATCAGCACATGATGAGAAAAAGATTGCCCAGTCATTTAGCTCCTCTTTTCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCGACAGCACATCTTCCAAACTGCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTCCGTGGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACATCAGTATGAATTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGACTAGACTCCCAGGTTGGAAAACTAGCTTTTAGTATGCTTACTGCAAGACATGATGTCGCTTGCCACAAGACTTCCGGATATATGCCAAAGAATCCTAAAGTCAGCTCAAAGTGCAGAAACAAAGTTGATCGATCAGATAAGAAGTTGTCAAAGATTGGTCAAGACGCTGTTTTATCCGTTGACCTAATGAAATCCGGTAGAGCTTCAAATACTTCAAAGAAGATGGGGCTTAGCCCCAAGTCGAAAGCTGTCCATAAAAAGCTGGCTGTACCGAGGAAACATCGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAGCAAAGAGTAGCTGAAGCTTTTAGTTCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAGTTCTCTGCTGCACATCTTCCCGCCTACAAAACAGAAGTTACACTTCGCAATTCAAGAGGCGATTGTTGGACTGTGAACTCCGTCCCAGATGCTAAAGGGAGAACAATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACGTCAATTTTGGTGACACATGCATTTTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGAGTTGGAAAGGAAGGTCTTGACAATCAAAATGGGCATGTGAAACTTATAGCTAACTAG 1701 0.4121 MACECKGKLNVRKPQFYQVFSPSSTSQSLRIPDGFVRQMEGTTRGLVSLTGPSGNTWQVRLVEQDNYLFLHHGWSTFVGDHHLEYGDLLVFRYEGHLHFTVQVFGENACEKEAAFHTECNLNSSNFDKETSLDVVGVRKNMRCDTIENQELELGIAGRDLSKYEVVKPISMIRETEETHKECSASTVPVPFHTGNSNEDQASLSTLSAHDEKKIAQSFSSSFPYFVKIIKTFNVSGSYTLNIPYQFSTAHLPNCKIQIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNGIKVGDVCIFELIHQYELRVRIAEVGKDGLDSQVGKLAFSMLTARHDVACHKTSGYMPKNPKVSSKCRNKVDRSDKKLSKIGQDAVLSVDLMKSGRASNTSKKMGLSPKSKAVHKKLAVPRKHRVEDELSSQAKAGLRMLFALDEQRVAEAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGDCWTVNSVPDAKGRTIHTFCGGWMAFVRDNDVNFGDTCIFELVSHYVMQVYISGVGKEGLDNQNGHVKLIAN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00272 566 CDD B3_DNA 223 317 IPR003340 GO:0003677
Trre2g00272 566 SUPERFAMILY DNA-binding pseudobarrel domain 218 318 IPR015300 -
Trre2g00272 566 CDD B3_DNA 14 104 IPR003340 GO:0003677
Trre2g00272 566 ProSiteProfiles B3 DNA-binding domain profile. 225 321 IPR003340 GO:0003677
Trre2g00272 566 MobiDBLite consensus disorder prediction 393 420 - -
Trre2g00272 566 Pfam B3 DNA binding domain 454 539 IPR003340 GO:0003677
Trre2g00272 566 Pfam B3 DNA binding domain 225 316 IPR003340 GO:0003677
Trre2g00272 566 Pfam B3 DNA binding domain 19 104 IPR003340 GO:0003677
Trre2g00272 566 Gene3D - 439 549 IPR015300 -
Trre2g00272 566 Gene3D - 207 320 IPR015300 -
Trre2g00272 566 ProSiteProfiles B3 DNA-binding domain profile. 454 550 IPR003340 GO:0003677
Trre2g00272 566 CDD B3_DNA 452 545 IPR003340 GO:0003677
Trre2g00272 566 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 323 IPR044837 -
Trre2g00272 566 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Trre2g00272 566 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Trre2g00272 566 SUPERFAMILY DNA-binding pseudobarrel domain 447 548 IPR015300 -
Trre2g00272 566 Gene3D - 8 109 IPR015300 -
Trre2g00272 566 SMART B3_2 225 321 IPR003340 GO:0003677
Trre2g00272 566 SMART B3_2 16 107 IPR003340 GO:0003677
Trre2g00272 566 SMART B3_2 454 550 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00272 Trre-Chr2 2191085 2195103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00272 13 331 B3 DNA Binding Superfamily AT3G18990 23.513 8.63e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00272 B3 6.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00272 - - gmx:100814386 862.448