Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00269 ATGGTTGGAATTGGAGGACAACAAATCTATGGTGGAAGCAAATCATGGCAAGAAGATATTTACTGGACTCATTTTCAGTTCATCCATTTCACACAATTTCTGAGAACTGATTTTCAACAACAACTTGCACTTCCGAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGCGACCCTTAAAGGTCCTAGTGGAGTTGTGCGGAATATAGGGCTGACAACTAAAGATGATATTGTTTATTTCTCGAATGGCTGGCAACAATTCTTGAAAGATCACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCATATTTTGTTGGAAAATGTGGACATACTCAAACTGAACAAGGGGATAGCAAGCCAAAGGAAACAAACAATTCTGTTGAAGAAATCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATATAGGCGTCTTAATAATATACGAACACCATTAGCTGTACCTTTTGAAACTACCAATGAGACGACTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTGGTGGCTGATGCACTCACTAAGACCAAAACTATACAGTTTCCCTTCCAACCAACTGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGACTAAGAAGCGAGGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGCGGGTTGTAACAAGGAACACTCAGAGGCATCTATCCTGAATAGAAGTGGCAAGGAAGATGTTCTTAGCAGCGGAGCTTCACTTTCGAGGTCATCAATATGTCATGAGAAAAAGATAGCCCAGTCATTTACCTCCACTTTTCCATATTTTGTTAAAATAATGAAATCGTTCAATGTCGGCGGTTCACGTATTCTGAATATACCATCGAAATTTTCGAAAGCACATCTTCCAAACTCCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAAAAGTGGACTGTTAATGCTGTTCCAACGACTAAATTGCAGACAAGTCACACTATGTGTGGAGGATGGTTGGATTTTGTTCGTGGCAACAGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATAGGTGAGTGTGAATTACATGTTCGTATCGCTGAGGTTGGAAAAGATGGGCTAGAAGACTCCCAGGTTGGAAAACAAGCTTCTAGTATGCCTAGTGCAAGGCATGCTGTCGCTCGCCACAAGACTTCCAGTTCGAGATATAAGTCAAAGAGTTCTAAATTCAGCTCAAAGTACAGAAAGAAAGTTGTTGCATCAGATAAAAAGTTGTCAAAGATTGGTCAAGAAGCTGTTTCATCCATTGACTTGAAGAAATCTGATGTTGGAAAGGAAGGTCTTGACAATCAGAATGGACATGTGACCCTAACTACCTAG 1479 0.3969 MVGIGGQQIYGGSKSWQEDIYWTHFQFIHFTQFLRTDFQQQLALPKTFSNNVKKKLPENATLKGPSGVVRNIGLTTKDDIVYFSNGWQQFLKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHTQTEQGDSKPKETNNSVEEINTASNGGVECGSPEKYRRLNNIRTPLAVPFETTNETTFNAGVESASPEKLVADALTKTKTIQFPFQPTGKRTKKPVNEVTPTPVQTKKRGRPFKAAHSCDLAGCNKEHSEASILNRSGKEDVLSSGASLSRSSICHEKKIAQSFTSTFPYFVKIMKSFNVGGSRILNIPSKFSKAHLPNSKIQIILHNLKGEKWTVNAVPTTKLQTSHTMCGGWLDFVRGNSIKVGDVCIFELIGECELHVRIAEVGKDGLEDSQVGKQASSMPSARHAVARHKTSSSRYKSKSSKFSSKYRKKVVASDKKLSKIGQEAVSSIDLKKSDVGKEGLDNQNGHVTLTT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00269 492 SUPERFAMILY DNA-binding pseudobarrel domain 26 118 IPR015300 -
Trre2g00269 492 CDD B3_DNA 29 118 IPR003340 GO:0003677
Trre2g00269 492 Gene3D - 23 123 IPR015300 -
Trre2g00269 492 SMART B3_2 307 403 IPR003340 GO:0003677
Trre2g00269 492 SMART B3_2 30 120 IPR003340 GO:0003677
Trre2g00269 492 Pfam B3 DNA binding domain 39 118 IPR003340 GO:0003677
Trre2g00269 492 Pfam B3 DNA binding domain 307 399 IPR003340 GO:0003677
Trre2g00269 492 SUPERFAMILY DNA-binding pseudobarrel domain 300 400 IPR015300 -
Trre2g00269 492 MobiDBLite consensus disorder prediction 410 442 - -
Trre2g00269 492 MobiDBLite consensus disorder prediction 428 442 - -
Trre2g00269 492 MobiDBLite consensus disorder prediction 221 240 - -
Trre2g00269 492 ProSiteProfiles B3 DNA-binding domain profile. 307 403 IPR003340 GO:0003677
Trre2g00269 492 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Trre2g00269 492 MobiDBLite consensus disorder prediction 221 248 - -
Trre2g00269 492 CDD B3_DNA 305 399 IPR003340 GO:0003677
Trre2g00269 492 MobiDBLite consensus disorder prediction 137 167 - -
Trre2g00269 492 Gene3D - 291 403 IPR015300 -
Trre2g00269 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 405 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00269 Trre-Chr2 2173695 2177768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00269 16 388 REM Transcription Factor Family AT4G33280 30.457 1.02e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00269 B3 1.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00269 - - tpra:123894208 851.277