Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00268 ATGGGAGGAGGAAGCAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCCGCAATCATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTAAAGAAGAAATTGCCAGAAATTGTGACCCTTAAAGGTCCTAGTGGTGTTGTGTGGAATGTAGGGCTGACAACTAGAGACGATACCTTGTACTTCACGATCGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTAAGAAAATGTGGACATGCTCAAACTGAACAAAGGGGTAGCAAGGCAAAGGACACAAACACTGCTACTGAAGAAGTCATTAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAATTTTCAGCGTCTTAATAGTATAGGAACACCATTGGATGTAGCTTTTGTAACTACCAATGAGACAACTTTTAATACTGGTATTGAATCTGCATCCCCAGAGCAGTTCATGGCCGATGCAGTCACTGAGACCACACCTGTAGTGGTTCCCTCCCAAACAACCGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTATGCCTGACCAGACTAAGAAGCGAGGAACATCACCAAAAGCAGCTAATTCTAGTGAGAGAGCACTTGAGAAGGAACACTCAGAGGCAGCCATCCCGTGTAGAAGTGGGAACGAAGATGACCGTTATACTCTCCGCGGAGCTAAACTGTCAAAGTTCTCAGAACCTAACGAGAAAGAGATAGCCCAATCATATACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAATCGTTCAATGTTGGTGGTTCATGTTTGCTGAATATACCAACTCAATTTTCGAAAGCACATTTTCCAAACCACATAATAAAGATTATTCTACATAATTTGAAAGGAGAACAGTGGACTGTTAATTGTGTTAATAAATCAATTGTGCATCATACACATCACATTTTATGTGGAGGATGGATAGATTTTGTTCGTTGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTATGAATTTCGTGTTCGTATCGCTGAGGTTGGAAAAAATGGACTAGACTTCCAGGATGAAAAACTAGATTCTAGTGCCTAG 1236 0.3989 MGGGSKSWEEDIYWTHFQFIHFTQFLRNHFHQQLALPKTFSNNVKKKLPEIVTLKGPSGVVWNVGLTTRDDTLYFTIGWQQFVKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVRKCGHAQTEQRGSKAKDTNTATEEVINTASNGGVECGSPENFQRLNSIGTPLDVAFVTTNETTFNTGIESASPEQFMADAVTETTPVVVPSQTTGKRTKKPVNEVMPDQTKKRGTSPKAANSSERALEKEHSEAAIPCRSGNEDDRYTLRGAKLSKFSEPNEKEIAQSYTSSFPYFVKIMKSFNVGGSCLLNIPTQFSKAHFPNHIIKIILHNLKGEQWTVNCVNKSIVHHTHHILCGGWIDFVRCNGIKVGDVCIFELIREYEFRVRIAEVGKNGLDFQDEKLDSSA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00268 411 Gene3D - 280 396 IPR015300 -
Trre2g00268 411 CDD B3_DNA 21 110 IPR003340 GO:0003677
Trre2g00268 411 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 397 IPR044837 -
Trre2g00268 411 CDD B3_DNA 297 392 IPR003340 GO:0003677
Trre2g00268 411 MobiDBLite consensus disorder prediction 246 265 - -
Trre2g00268 411 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Trre2g00268 411 Gene3D - 15 115 IPR015300 -
Trre2g00268 411 ProSiteProfiles B3 DNA-binding domain profile. 299 396 IPR003340 GO:0003677
Trre2g00268 411 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Trre2g00268 411 MobiDBLite consensus disorder prediction 212 265 - -
Trre2g00268 411 SMART B3_2 22 112 IPR003340 GO:0003677
Trre2g00268 411 SMART B3_2 299 396 IPR003340 GO:0003677
Trre2g00268 411 Pfam B3 DNA binding domain 28 110 IPR003340 GO:0003677
Trre2g00268 411 Pfam B3 DNA binding domain 299 392 IPR003340 GO:0003677
Trre2g00268 411 SUPERFAMILY DNA-binding pseudobarrel domain 292 393 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00268 Trre-Chr2 2169150 2172773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00268 8 381 REM Transcription Factor Family AT4G33280 32.992 9.33e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00268 B3 8.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00268 - - tpra:123894208 708.368