Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00267 ATGGGAGGTGTTGGGAGGAAGATATCATGGCAGGAAGATATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCACCACTCATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATGTAAAGAAGAAATTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTTTGTGGGATGTAGGGCTGACAACTAAAGATGATGTTGTTTACTTCACAAACGGCTGGCAACAGTTCTTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTGGACATACTCAAACTGAACAAGGGGATAGCAAAGCAAAGGAAACAAACAATTTTGTTGAAGAAATCAATACTGCTTCTAATGCGGGTGTTGAATGTGGTTCACCTGAAAAATATCGGCGTCGTAATAGTATACGAACACCGTTAGCTGTACCTTTTGAAACTACCAATGGAGAGACTTTTAGTGCTGGTGTTGAATATGCTTCCCCTGAGAAATTGATGGCTGATGCACTCACTAAGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGACTAAGAAGCGAGGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGTGGCTTGTAACAAGGAACACTCAGGTTAA 741 0.4022 MGGVGRKISWQEDIYWTHFQFIHFTQFLTTHFQQQLALPKTFSDNVKKKLPENVTLKGPSGVLWDVGLTTKDDVVYFTNGWQQFLKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHTQTEQGDSKAKETNNFVEEINTASNAGVECGSPEKYRRRNSIRTPLAVPFETTNGETFSAGVEYASPEKLMADALTKTKKPVNEVTPTPVQTKKRGRPFKAAHSCDLVACNKEHSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00267 246 CDD B3_DNA 23 112 IPR003340 GO:0003677
Trre2g00267 246 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre2g00267 246 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 221 IPR044837 -
Trre2g00267 246 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Trre2g00267 246 Gene3D - 17 117 IPR015300 -
Trre2g00267 246 SMART B3_2 24 114 IPR003340 GO:0003677
Trre2g00267 246 Pfam B3 DNA binding domain 32 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00267 Trre-Chr2 2165598 2166871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00267 8 136 REM Transcription Factor Family AT4G33280 53.846 3.66e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00267 B3 1.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00267 - - tpra:123894208 406.757