Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00264 ATGGAAGCAAGAAGACAAACCAGTGGCGGTAGCAAATCTTGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTCTCACCACTGATTTTCAACAACATCTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATGTAAGGCTGACAACTAGAGATGATACTTTGTACTTCACTGACGGTTGGCAAGAATTCATGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAGAGTTTCTGCGAGAAAGCAGCTTCTTATTTTGTTGGAAAATGTGGACATGCTCAAACTGAACAAGGAGATAGCAAGGAAAAGGAAACAAACAATTATGATGAAGAAATCAATAATGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCAGCGTTTTAATAGTGGTAATGTTCATACCGAACAAGGGGGTTGCGAGGGAAAGGACACAAACAATTGTGTTGAAGAAGTCAATACTGTTTCTAATGGTGGTGTTGAATGTTGTACACCTCTGAAAGTTCGGTCTCTTGACAGTATAAGAACGCCATTAGTTGCACCTTTTAAAACTAGCAATGAGACGGCTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAACAGTTCATGGCTGATGCAGTCACTAAGACCACACCTGCAGTGTTTCACTTCCATCCAACCGGAAAAAGGACCAAGAGGCCTTTTAATGAAGTTATGTCTATCCCGAGTAAGAGGAGAAAAAGATCACCAAAAGCAGCTAATTCTTGGCAGAAAGGACTTGATTGGCTGCCTTGTAACAAGGAACACTCAGAAGCAACCATCCTGTATAAAAGTGGGAAGGGAAATGACCATCATATTCTCAGTGGAGCTTCACTTTCAACGCTATCAGCACGTGATGAGAAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTCAAAATAATCCAAACGTTCAATGTCAATGGGTCACGAATTCTGAATATACCTCGTCATTTTTCGATGAGACATCTTCCAAACTGCAACGTAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACCGTTAATTCTGTTGTTAGAACTAGAGTACATACATATCACATTATATGTGGAGGATGGGTGGATTTTGTTCGTGGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTTGAACTTATACGTAAGTGTGAATTACGTGTTCATATCGTTGAGGTTGGAAAAGATGGGCTAGACTCCCAGTTTGAAAAAATAGCTTCTAGTATGCTTACTGCAAGACATGATGTCGCTTGCCACAAGACTTCCAAATATATGCCAAAGAATCCTAAAGTCAGCTCAATATGCAGAAACAAAGTTGATGTATCAAATAAAAAGTCGTCAAAGATTGGTCAAGGAGCTGCTTTATCCATCTTAAAGAAATACAGTATAGCTTCAAATACTTCAAAGAAGATGGGGATTTGCCCCAAGTCGAAAGCTGTCCATAAAAAGTTGGCTGTACGGAGGAAACGTCGTGTTGAAAAAGATCTAGGCTTACAGGCTAAAGCTGGTGTGAGAAAGTTGTGTGCACTCGACGAACAAAGAGTAGCTGAAGCTTTTGGTTCCTCATTTCCTAATTTTGTGAAAATCATGAAGAGCTTCAATGTCAGTGGATCATTCACTTTGAAAATCCCAAATCGGTTCTCTGTTGCACATCTCCCCGCCTGCAAAACAGAAGTTACGCTTCGCAATTCAAGAGGCAAATGTTGGACTGTGAACTCTGTCCCAGATGCTAAATTGAGAAAAAATCACACCTTTTGTGGGGGTTGGAACACCTTTGTTCGTGATAATGACATAAATATTGGCGATACGTGCATATTTGAGCTCGTTTCTCATTATGTAATGCAGGTTTATATATCTGGTGTTGGGAAGGAAGGTTTTGACCATCAAAATGGGAAGTGA 2058 0.3965 MEARRQTSGGSKSWEEDIYWTHFQFIHFTQFLTTDFQQHLALPKTFSDNLKKLPENVTLKGPSGVVWNVRLTTRDDTLYFTDGWQEFMKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHAQTEQGDSKEKETNNYDEEINNASNGGVECGSPEKFQRFNSGNVHTEQGGCEGKDTNNCVEEVNTVSNGGVECCTPLKVRSLDSIRTPLVAPFKTSNETAFNAGVESASPEQFMADAVTKTTPAVFHFHPTGKRTKRPFNEVMSIPSKRRKRSPKAANSWQKGLDWLPCNKEHSEATILYKSGKGNDHHILSGASLSTLSARDEKKIAQSFTSSFPYFVKIIQTFNVNGSRILNIPRHFSMRHLPNCNVKIILHNLKGEHWTVNSVVRTRVHTYHIICGGWVDFVRGNGIKVGDVCIFELIRKCELRVHIVEVGKDGLDSQFEKIASSMLTARHDVACHKTSKYMPKNPKVSSICRNKVDVSNKKSSKIGQGAALSILKKYSIASNTSKKMGICPKSKAVHKKLAVRRKRRVEKDLGLQAKAGVRKLCALDEQRVAEAFGSSFPNFVKIMKSFNVSGSFTLKIPNRFSVAHLPACKTEVTLRNSRGKCWTVNSVPDAKLRKNHTFCGGWNTFVRDNDINIGDTCIFELVSHYVMQVYISGVGKEGFDHQNGK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00264 685 CDD B3_DNA 27 115 IPR003340 GO:0003677
Trre2g00264 685 ProSiteProfiles B3 DNA-binding domain profile. 579 675 IPR003340 GO:0003677
Trre2g00264 685 Gene3D - 21 120 IPR015300 -
Trre2g00264 685 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 449 IPR044837 -
Trre2g00264 685 SUPERFAMILY DNA-binding pseudobarrel domain 344 445 IPR015300 -
Trre2g00264 685 CDD B3_DNA 577 670 IPR003340 GO:0003677
Trre2g00264 685 Gene3D - 333 447 IPR015300 -
Trre2g00264 685 Gene3D - 563 674 IPR015300 -
Trre2g00264 685 ProSiteProfiles B3 DNA-binding domain profile. 351 447 IPR003340 GO:0003677
Trre2g00264 685 CDD B3_DNA 349 443 IPR003340 GO:0003677
Trre2g00264 685 SUPERFAMILY DNA-binding pseudobarrel domain 23 115 IPR015300 -
Trre2g00264 685 Pfam B3 DNA binding domain 351 444 IPR003340 GO:0003677
Trre2g00264 685 Pfam B3 DNA binding domain 579 664 IPR003340 GO:0003677
Trre2g00264 685 Pfam B3 DNA binding domain 36 115 IPR003340 GO:0003677
Trre2g00264 685 SMART B3_2 28 117 IPR003340 GO:0003677
Trre2g00264 685 SMART B3_2 351 447 IPR003340 GO:0003677
Trre2g00264 685 SMART B3_2 579 675 IPR003340 GO:0003677
Trre2g00264 685 SUPERFAMILY DNA-binding pseudobarrel domain 572 673 IPR015300 -
Trre2g00264 685 ProSiteProfiles B3 DNA-binding domain profile. 25 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00264 Trre-Chr2 2155861 2160223 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00264 14 139 REM Transcription Factor Family AT4G33280 57.031 1.47e-42 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00264 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00264 - - tpra:123885939 1168.3