Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00263 ATGGTTAGAAACTTATTAGTTTTGCTTTCAACAATATTTGTAGTGGTTAATGCATTCAACAACCACAATGAGAATCATGGTGGTTACCCAACATGGTTTTCTAAATCTAATCATATGTTATTGTCTAAGTTTAAGGATGTTGTTCAACCCAATGTAACTGTGGCTAAGGACGGTAGTGGCCAATTTAAGACCGTCACTGAAGCTATTAACTCATACCCGATTAAAAGTCGAGGTAGATACGTCTTCGTCGTCTATGTTAAAGCCGGTATCTACAATGAGTATATTACCATTGCTAAAAACAAGAATAACATTCTCTTATATGGTGATGGCCCTACAAAGACCATTATCACCGGAAGCAAGAGTCTCAATAATGGAGCTAGAAAAACAATGGACACTGCTACCTTCTCCACCCTAGGCAAAGATTTTATTGCTAAGTCAATTACATTTGAAAACACGGCGGGTCATGAAGCTGGCCCGGCGGTGGCACTTCACGTGAAAGGTGATCGTTCAGCATTCTTTGATTGTGGAATCCACGGTTACCAAGACACATTGTACGTACACACACTTCGTCAATTCTACCGCAATTGCGAGATCTCTGGAACCATTGATTTCATCTTTGGACATTCAACTACCTTGATCCAAAATTCTAAAATCATTGTGAGGATGCCAGGTCCAGATCATGGCAACGTTGTGGTGGCAGATGGAACAAAAGATATGAATGCAGTCACCGGAATAGTCCTTCAAAATTGCTCAATCATGCCAGATGATGAGCTTTACCCTAATAGGTTGACAGTGAAGACTTACTTGGCAAGACCATGGAAGCCATATTCAAGGGCAGTATTTATCAACAATTATTTGGGTGATTTGATTCAACCAGATGGATTTTCAATATGGGGTCCTAATGAAACACACACTGCAACCTGCTACTTTGCAGAATTTGGTAGCACTGGGCCAGGTGCCAATTCTCAAGCAAGGGTTAAATGGAGTAAAGGTCTTATTAGTAAGGATGAAGCTACTAAATTCACTGCTCAACCATGGCTTCAAGCTAACACTTGGTTGCCTGCCACTGGCATTCCTTTCAGTTCTGGCCTTGAAGCTTAA 1101 0.4087 MVRNLLVLLSTIFVVVNAFNNHNENHGGYPTWFSKSNHMLLSKFKDVVQPNVTVAKDGSGQFKTVTEAINSYPIKSRGRYVFVVYVKAGIYNEYITIAKNKNNILLYGDGPTKTIITGSKSLNNGARKTMDTATFSTLGKDFIAKSITFENTAGHEAGPAVALHVKGDRSAFFDCGIHGYQDTLYVHTLRQFYRNCEISGTIDFIFGHSTTLIQNSKIIVRMPGPDHGNVVVADGTKDMNAVTGIVLQNCSIMPDDELYPNRLTVKTYLARPWKPYSRAVFINNYLGDLIQPDGFSIWGPNETHTATCYFAEFGSTGPGANSQARVKWSKGLISKDEATKFTAQPWLQANTWLPATGIPFSSGLEA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00263 366 ProSitePatterns Pectinesterase signature 1. 78 97 IPR018040 -
Trre2g00263 366 Gene3D - 45 364 IPR012334 -
Trre2g00263 366 FunFam Pectinesterase 4 48 364 - -
Trre2g00263 366 PANTHER PECTINESTERASE 15 354 - -
Trre2g00263 366 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Trre2g00263 366 Pfam Pectinesterase 51 349 IPR000070 GO:0030599|GO:0042545
Trre2g00263 366 SUPERFAMILY Pectin lyase-like 48 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00263 Trre-Chr2 2152969 2154842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00263 25 364 Carbohydrate Esterase AT2G47030 44.193 3.36e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00263 K01051 - gmx:100808559 456.062