Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00258 ATGGGAGTTGTTGGAATTGGAGGCAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTTACTCAATTTCTCCGCAATGATTTTCACCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTAACCCTTAGAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGACAACTAGAGACGATACCTTGTTGTACTTCACAAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGCTGAGCAAGGGGGTAGCACGGCAAAGGACGCAAACATTTGCGCTGAAGAAGTCATTGATACTGCTTCAAATGGTGGTGTAGAAACGCCATTAGTTGTACCTTTTGGAACTACCAATGGAAAGACTTGTAATGCTGGTGTCAGACCTGCTTCCCCTGAGAAATTAATGGCTGATGCACTCACTAAGACCACAACTCTACAATTTCCATTCCAACCAACCGGCAAAAGGACCGAGAAGCTTGTTAATGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGCAGGTAAGTCTCGTGAGAGAGCACATGATTTGGTGGCTTGTAACAACGAACACTCGGCTCTGAATAGAAGTGGGAATGAAGACGAGGAGGAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTAGTTAAAATAATCAAAACGTGCAATGTCATTGGTTCACGTACTCTGACAATCCCATGTCATTTTGCTGCTGAACATTTCCCTGCCAACAAAACAGAAGTTACGCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCGTCCCAGTTGGAAGATCAGCTCACACCTTCTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACTTAAAAGTTGGCGACGTGTGCATTTTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTTTTGATTATCAAAATGGGCATGCTAAACTTAATAGCGTATAG 1065 0.4263 MGVVGIGGKSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENVTLRGPSGVVWNVGLTTRDDTLLYFTNGWQQFVKDHSLKENDFLVFKYNAEQGGSTAKDANICAEEVIDTASNGGVETPLVVPFGTTNGKTCNAGVRPASPEKLMADALTKTTTLQFPFQPTGKRTEKLVNEVTPVQTKKRGRPPKAGKSRERAHDLVACNNEHSALNRSGNEDEEEKIAQSFTSSFPYLVKIIKTCNVIGSRTLTIPCHFAAEHFPANKTEVTLRNSRGECWTVNSVPVGRSAHTFCGGWMAFVRDNDLKVGDVCIFELVSHYVMQVYISGVGKEGFDYQNGHAKLNSV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00258 354 SMART B3_2 25 111 IPR003340 GO:0003677
Trre2g00258 354 SMART B3_2 244 338 IPR003340 GO:0003677
Trre2g00258 354 Gene3D - 18 116 IPR015300 -
Trre2g00258 354 CDD B3_DNA 242 333 IPR003340 GO:0003677
Trre2g00258 354 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 340 IPR044837 -
Trre2g00258 354 Pfam B3 DNA binding domain 245 327 IPR003340 GO:0003677
Trre2g00258 354 Pfam B3 DNA binding domain 32 106 IPR003340 GO:0003677
Trre2g00258 354 Gene3D - 224 337 IPR015300 -
Trre2g00258 354 SUPERFAMILY DNA-binding pseudobarrel domain 21 103 IPR015300 -
Trre2g00258 354 SUPERFAMILY DNA-binding pseudobarrel domain 237 336 IPR015300 -
Trre2g00258 354 ProSiteProfiles B3 DNA-binding domain profile. 244 338 IPR003340 GO:0003677
Trre2g00258 354 CDD B3_DNA 24 102 IPR003340 GO:0003677
Trre2g00258 354 ProSiteProfiles B3 DNA-binding domain profile. 22 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00258 Trre-Chr2 2137956 2141127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00258 11 323 REM Transcription Factor Family AT4G33280 28.451 2.87e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00258 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00258 - - tpra:123885982 600.897