Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00257 ATGGGAGTTGTTGGAATTGGAGGCAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTTACTCAATTTCTCCGCAATGATTTTCACCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTAACCCTTAGAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGACAACTAGAGACGATACCTTGTTGTACTTCACAAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGCTGAGCAAGGGGGTAGCACGGCAAAGGACGCAAACATTTGCGCTGAAGAAGTCATTGATACTGCTTCAAATGGTGGTGTAGAAACGCCATTAGTTGTACCTTTTGGAACTACCAATGGAAAGACTTGTAATGCTGGTGTCAGACCTGCTTCCCCTGAGAAATTAATGGCTGATGCACTCACTAAGACCACAACTCTACAATTTCCATTCCAACCAACCGGCAAAAGGACCGAGAAGCTTGTTAATGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGCAGCAGCTCTGAATAGAAGTGGGAATGAAGACGAGGAGGAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTAGTTAAAATAATCAAAACGTGCAATGTCATTGGTTCACGTACTCTGACAATCCCATGTCATTTTGCTGCTGAACATTTCCCTGCCAACAAAACAGAAGTTACGCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCGTCCCAGTTGGAAGATCAGCTCACACCTTCTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACTTAAAAGTTGGCGACGTGTGCATTTTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTTTTGATTATCAAAATGGGCATGCTAAACTTAATAGCGTATAG 1014 0.4241 MGVVGIGGKSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENVTLRGPSGVVWNVGLTTRDDTLLYFTNGWQQFVKDHSLKENDFLVFKYNAEQGGSTAKDANICAEEVIDTASNGGVETPLVVPFGTTNGKTCNAGVRPASPEKLMADALTKTTTLQFPFQPTGKRTEKLVNEVTPVQTKKRGRPPKAAALNRSGNEDEEEKIAQSFTSSFPYLVKIIKTCNVIGSRTLTIPCHFAAEHFPANKTEVTLRNSRGECWTVNSVPVGRSAHTFCGGWMAFVRDNDLKVGDVCIFELVSHYVMQVYISGVGKEGFDYQNGHAKLNSV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00257 337 Gene3D - 207 320 IPR015300 -
Trre2g00257 337 SUPERFAMILY DNA-binding pseudobarrel domain 21 103 IPR015300 -
Trre2g00257 337 SMART B3_2 227 321 IPR003340 GO:0003677
Trre2g00257 337 SMART B3_2 25 111 IPR003340 GO:0003677
Trre2g00257 337 Pfam B3 DNA binding domain 32 106 IPR003340 GO:0003677
Trre2g00257 337 Pfam B3 DNA binding domain 228 310 IPR003340 GO:0003677
Trre2g00257 337 ProSiteProfiles B3 DNA-binding domain profile. 227 321 IPR003340 GO:0003677
Trre2g00257 337 Gene3D - 18 116 IPR015300 -
Trre2g00257 337 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 323 IPR044837 -
Trre2g00257 337 CDD B3_DNA 24 102 IPR003340 GO:0003677
Trre2g00257 337 CDD B3_DNA 225 316 IPR003340 GO:0003677
Trre2g00257 337 MobiDBLite consensus disorder prediction 188 212 - -
Trre2g00257 337 ProSiteProfiles B3 DNA-binding domain profile. 22 120 IPR003340 GO:0003677
Trre2g00257 337 SUPERFAMILY DNA-binding pseudobarrel domain 220 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00257 Trre-Chr2 2137956 2141127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00257 11 104 REM Transcription Factor Family AT4G33280 55.319 3.05e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00257 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00257 - - tpra:123885982 564.688