Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00256 ATGGGAGGAAGAGGAGGACAAACCAGTGGTAGCAGCAAATCATGGGAGGAAGAAATCTACTGGACCCATTTCCAGTTCATTCATTTCATTCAATTTCTCCGCAATGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAGAGATGATACTGTTTACTTTGTGGACGGTTGGCAACGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTCTCTTTAAGTACAATGGTGAATCGCTCTTTGAGGTTTTGATCTTTGATGGGGAAAGTAATTGTGAGAAGGCAGTTTCTTATTTTGTTGGAAAATGTGATAATGTTAAAGCTGGACAAGGGGGTAGCAAGGCAAAGGATATAAACACTTCTGCTGAAGAAGTCATTACTGCTTCTGATGGTGGTTCGTCTGAGAAATTTCGGTGTCGTAACAATATTGGAACACCATTAGCTGTACCTTTTGAAACTACTAATGAAAAGACTTCAAACGCTGGTGTTGAATCTGATTCTCCTGAGCAGTTCATGGCTGATGCAGTCACTAAGACCGCACCTGCAGCGCTTCCCTCGCAACGAACCAGCAAAAGGGCGGCTAAGAAGCCTGTTGACGATGTTGTGCCTCCTCCAGCTAGGAAGCGGGGAAGACCACCAAGAGCAGCTAGTTATAGTGGGACGGGACTTGATTTGGTGCCATTTAATTCAGAGGCTTTTAACAAGGAACTCTCAGAGAGCAAAGGGAAAGAAGATGGCGATGAGGGCAGAAGCTGA 846 0.4314 MGGRGGQTSGSSKSWEEEIYWTHFQFIHFIQFLRNDFQQQLALPKTFSNNVKKKLPENVTLKGPSGVVWNIGLTTRDDTVYFVDGWQRFVKDHSLKENDFLLFKYNGESLFEVLIFDGESNCEKAVSYFVGKCDNVKAGQGGSKAKDINTSAEEVITASDGGSSEKFRCRNNIGTPLAVPFETTNEKTSNAGVESDSPEQFMADAVTKTAPAALPSQRTSKRAAKKPVDDVVPPPARKRGRPPRAASYSGTGLDLVPFNSEAFNKELSESKGKEDGDEGRS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00256 281 MobiDBLite consensus disorder prediction 222 237 - -
Trre2g00256 281 SUPERFAMILY DNA-binding pseudobarrel domain 25 117 IPR015300 -
Trre2g00256 281 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 210 IPR044837 -
Trre2g00256 281 MobiDBLite consensus disorder prediction 266 281 - -
Trre2g00256 281 MobiDBLite consensus disorder prediction 209 281 - -
Trre2g00256 281 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Trre2g00256 281 CDD B3_DNA 28 117 IPR003340 GO:0003677
Trre2g00256 281 Pfam B3 DNA binding domain 38 117 IPR003340 GO:0003677
Trre2g00256 281 SMART B3_2 29 119 IPR003340 GO:0003677
Trre2g00256 281 Gene3D - 22 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00256 Trre-Chr2 2133082 2135767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00256 15 141 REM Transcription Factor Family AT4G33280 54.688 1.94e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00256 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00256 - - psat:127093533 357.066