Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00255 ATGGTGGGAGGTGTGTGCAGATCTTGGGAGGAAGACATTTACTGGACCCATTTTCAATTCATCCATTTCACACAATTTCTTCGTAATGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGTTGCCAGAAAATGCGGTCCTAAAAGGTCCTGGTGGAGTTGTGTGGGATATAGAGCTGACAACTAGAGACGGTATTGTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGCGAGTCATTGTTTGAGGTTTTAATCTTTGATGGGGAGAGTTTCTGTGAGAAGGCCGCTTCTTATTTTGTTCGAAAATGTGGGCGTGCTGCCAATACCGCCGAACAAGGGGGTGGATGTAATTCTAGCAAGAAAAAGGACACAGATAATTCTGTTGAAGAAGTCACTACTCCTTCGGATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCCTCACATCTAAACAGTATCCGAGTTCCATTTGCTGTACCTGTCGAAACCACCAACGGAAAGACTTCTAATGGTGGTGTTGAATCTGCCTCCCCCGAGCAATTCATAGCCGATGCGGTCACCGAGACTGAGCCTGCAGATGAACCCACTCAAAAAACCGGTAAACGGACAAGGAGACCTGTTCATACGTCTGTCCCAAGTAAGAAGAGAGGAAGACCGCCAGGAAGACCACCAAAAACATCTAATCCTGATGAGAGAGCTCTTAATTGGGTCGCTGATGCTGAAATTTCTCCTAAGGGTTCTCCAAAGGGTAGAGCTGGGGCACCGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGCTGAGATTGAAAATACTCTTCAGTTAGCCCAGGCAGCATGTACTGACGAATCCTTGCTTGTAACTATGCGACCTTCACATGTGTACAAGAGATTCTTCGTGTCATTCCCAAATAAGTGGATACTAAACCATCTTTCTCCATCATCTCAAGACGTGGTATTACGCATGGGTAAGAAAGAATGGCTTGGGAAATACTGTTATCATAATATTCGTAACAATGGAGGACTTACTGGCGGGTGGAAATATTTTGCCCTCGACAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAACCAGCTGGTCATATGCATGAATTATTGATCTTAGAAATGAGCATTTTTAGAGTCGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCAGGAAAGAAGAGGGGAGTTAAGAGAACCCCACCTGGTGCTAGCCAAAAAGAACTCGAGTCCATTGAAGGAAAGAAGAGGGGAGTGAAGCGAACACTGACCAATGGTGTCCAAACAGAACTCGAGTCCTTTGAAGGTGCGTAA 1401 0.4354 MVGGVCRSWEEDIYWTHFQFIHFTQFLRNDFDQQLALPKTFSNNVKKKLPENAVLKGPGGVVWDIELTTRDGIVYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRAANTAEQGGGCNSSKKKDTDNSVEEVTTPSDGVDEGVSPEKSSHLNSIRVPFAVPVETTNGKTSNGGVESASPEQFIADAVTETEPADEPTQKTGKRTRRPVHTSVPSKKRGRPPGRPPKTSNPDERALNWVADAEISPKGSPKGRAGAPELYTSNRRPVTKAEIENTLQLAQAACTDESLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVVLRMGKKEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHMHELLILEMSIFRVVEEITPLTAVNSPGKKRGVKRTPPGASQKELESIEGKKRGVKRTLTNGVQTELESFEGA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00255 466 MobiDBLite consensus disorder prediction 419 445 - -
Trre2g00255 466 ProSiteProfiles B3 DNA-binding domain profile. 310 408 IPR003340 GO:0003677
Trre2g00255 466 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Trre2g00255 466 SUPERFAMILY DNA-binding pseudobarrel domain 311 396 IPR015300 -
Trre2g00255 466 Gene3D - 289 410 IPR015300 -
Trre2g00255 466 MobiDBLite consensus disorder prediction 132 179 - -
Trre2g00255 466 CDD B3_DNA 313 406 IPR003340 GO:0003677
Trre2g00255 466 SUPERFAMILY DNA-binding pseudobarrel domain 19 111 IPR015300 -
Trre2g00255 466 CDD B3_DNA 22 111 IPR003340 GO:0003677
Trre2g00255 466 SMART B3_2 23 113 IPR003340 GO:0003677
Trre2g00255 466 SMART B3_2 310 403 IPR003340 GO:0003677
Trre2g00255 466 Gene3D - 16 116 IPR015300 -
Trre2g00255 466 Pfam B3 DNA binding domain 32 111 IPR003340 GO:0003677
Trre2g00255 466 Pfam B3 DNA binding domain 312 394 IPR003340 GO:0003677
Trre2g00255 466 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 411 IPR044837 -
Trre2g00255 466 MobiDBLite consensus disorder prediction 211 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00255 Trre-Chr2 2127402 2130772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00255 6 406 REM Transcription Factor Family AT4G33280 34.466 4.08e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g00255 B3 5.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00255 - - tpra:123885991 868.226