Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00254 ATGAATCCACATCATCATAATCATCATCTTCATCGTCATCAAGTACAAGGTGTATCAAGAAACTTCAACCATCAACACTTCCAACCTCACATCTATTGTCGCGACTTCAAGCGAAATACAAGAGATGTTAATGGTGTCAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACCACAACTCTTCACTCTCATTTTGTTCATGCCGTTCAACTTCTCGGTGGTCACGAAAGAGCAACACCAAAATCTGTGTTAGAACTAATGAATGTGAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGACCACTGACAAATCAGGAGCAGGTCATGGAATGCTACAGACACAAGGAATTAATAATATTGTTCCTTTGCATGGAACTAATTCTTGTGAGAGACCAAATTTACCACAAGACAGGTAA 441 0.3968 MNPHHHNHHLHRHQVQGVSRNFNHQHFQPHIYCRDFKRNTRDVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGHGMLQTQGINNIVPLHGTNSCERPNLPQDR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00254 146 FunFam Myb family transcription factor 51 109 - -
Trre2g00254 146 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 106 IPR006447 GO:0003677
Trre2g00254 146 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Trre2g00254 146 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 119 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre2g00254 146 Gene3D - 52 109 - -
Trre2g00254 146 Pfam Myb-like DNA-binding domain 54 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00254 Trre-Chr2 2103799 2105029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00254 18 128 G2-like Transcription Factor Family AT5G42630 68.376 7.03e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g00254 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00254 - - gmx:100778242 199.134