Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00252 ATGCTAAGAGGTGAAACCGTTGGTTCCAAGAGTGCGAGGCACGCCACCACCGCCACCGTATCTTCGAATAAAGTTCTTGTTGCGGTTAAAGCGGAGAAGGTGATCTCTAACACCGCATTAGCATGGGCGCTTACTCACATCGTCCATTCCAGCGACTCAATCACACTTCTCGCCGTTTATTCAACAGAAAAAACCGGAAGAAGATTCTGGAATGTTTCGAGATTAATGGCCGGAAATTGTTCGAATGGACGTGCGGGAAAGTTGCCGGAGGAGATTTCCGATATCTCTGAGTCTTGTGCTCAGATGGTTTTTCAGTTACACAATCACATTGAGGTTAGAGTGAAGATTAAGGTAGTCACGGGAACTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGTGGTTCACATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGATAAAACATTGCATGGATGAACTCAGCTGTAGCATTGTGGTGATGAATGGCTCACAGCCTAAAGTCCTCAGACTTAATTTAGGAGGACACTCCGATGAACTCCAAACTCCATTTTTCTCTTCTTCCTCTTCACCAGGTATACAAACTGGAAAGCTAAAAGGCCGCAGATTGAAGCATTCCACCCCAGTTGGTAGCCCTGAAGTAACCGGTTCTTCTGTTACAAGAAGTATTGGAGTAGATTCAGTGTCGAGTTCAGACTCAATGACTTCTCCTTTCCTGGTCTATAAAGAAAACCCTCTGTATGAGGGCCACGGATCACACAAATCAACAAACAAATCAATCAATAAGCCAAAAGATTTCAACTTCCAGCCACCATACTTTAATTTGGAAAGGGATAGCCCACCCCCTTCAAGGAAACTCCCAACATCATCTCTGGCTAGTGATAAGAACACTGAATTTTGGATCCATCAGAACCACATTAATAATGAGAAGCTTCAAAGAGCTGAAAACAGAATTATTCCAAGAACTAAATCTCCAAATTCTAAAACTTTACTCGAGAATTTTTTGCACTGTGATCAAGAGAAGAGAACAAATAAACTTGAGTTTAACAAAGCTGAAAATAGAAGTTATGTCACCAGCCCAAGCATCAGAGATAGCCCTATTCCTTTGGGTAGAAATTCCTCGATACCTCCTCCCTTGTGCTCACAGTGTCAGAATATAGCACCTGTATTTGGAAATCCTCCTAGACGGTTTTCTTACAGAGAGATAGAAGAAGCTACTGACATGTTCTCAGATTTGAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAGAGGGATACTCAAAGATGGCCAGGTTGTTGCAGTGAAACAATTAAAATCTAGTGGCTCTCAAGCAGATCTTGATTTCTGCAGGGAAGTTCGGGTTTTGAGTTGTGCACAACACAGAAATATTGTATTGCTGATAGGATTTTGCACAGAGGACAATGTGAGGATATTAGTCTATGAGTACGTATGTAATGGATCCTTGGACCTCTGCTTACACGGCAAAGAGGGTATACCTTTGGATTGGAACTCACGGTTAAAGATAGCGATTGGAGTTGCACGAGGCTTACGCTATCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACATTCGTCCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCTAGATGGCAATCAGAATGGAATATAAATACTGAAGATCGTGTTATGGGAACTTCTGGGTACATTGCACCGGAGTATCTTGATTCTGGAATTCTTACGTATAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGTTAATAACAGGTCGAAGAAATAATGAGTTGGAACAGTTCAATGGACATTCGTATCTTTCTGAATGGTTTCACCCCCTACACATGTTGGACCCCAATCATATCTTACAAAACGTTGGATCTCTCAATCCATGCTTGGATTCTGAGGGGTCACTAGAATCTAATCTTCAATTGCAAGCCATGACACAAGCTGCTTCATTGTGTTTACGTTTGGATCCTGATCATAGACCTCCAATTTCAAAGATCCTCAGAGTGCTTGAAGGGGGCAATCCAGTTCGTCCATTGGATTTAGACATCAATTCAATTGGTAACGCAAGTGGTCGTTTAAGTGGTTTGAGTTCGTATACTCCTCCTAAAGGTACAATAAGCCATTCTCGTATGTTATCACATTGA 2202 0.4196 MLRGETVGSKSARHATTATVSSNKVLVAVKAEKVISNTALAWALTHIVHSSDSITLLAVYSTEKTGRRFWNVSRLMAGNCSNGRAGKLPEEISDISESCAQMVFQLHNHIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEIKHCMDELSCSIVVMNGSQPKVLRLNLGGHSDELQTPFFSSSSSPGIQTGKLKGRRLKHSTPVGSPEVTGSSVTRSIGVDSVSSSDSMTSPFLVYKENPLYEGHGSHKSTNKSINKPKDFNFQPPYFNLERDSPPPSRKLPTSSLASDKNTEFWIHQNHINNEKLQRAENRIIPRTKSPNSKTLLENFLHCDQEKRTNKLEFNKAENRSYVTSPSIRDSPIPLGRNSSIPPPLCSQCQNIAPVFGNPPRRFSYREIEEATDMFSDLNFLAEGGFGVVHRGILKDGQVVAVKQLKSSGSQADLDFCREVRVLSCAQHRNIVLLIGFCTEDNVRILVYEYVCNGSLDLCLHGKEGIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDIRPKNILLTHDFEPLVADFGLARWQSEWNINTEDRVMGTSGYIAPEYLDSGILTYKVDVYAFGIVLLELITGRRNNELEQFNGHSYLSEWFHPLHMLDPNHILQNVGSLNPCLDSEGSLESNLQLQAMTQAASLCLRLDPDHRPPISKILRVLEGGNPVRPLDLDINSIGNASGRLSGLSSYTPPKGTISHSRMLSH 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00252 733 ProSitePatterns Tyrosine protein kinases specific active-site signature. 532 544 IPR008266 GO:0004672|GO:0006468
Trre2g00252 733 Gene3D Phosphorylase Kinase; domain 1 385 486 - -
Trre2g00252 733 FunFam Os07g0541700 protein 487 575 - -
Trre2g00252 733 ProSiteProfiles Protein kinase domain profile. 411 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00252 733 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 383 486 - -
Trre2g00252 733 Pfam Protein tyrosine and serine/threonine kinase 417 687 IPR001245 GO:0004672|GO:0006468
Trre2g00252 733 SUPERFAMILY Protein kinase-like (PK-like) 389 691 IPR011009 -
Trre2g00252 733 Gene3D Transferase(Phosphotransferase) domain 1 487 695 - -
Trre2g00252 733 MobiDBLite consensus disorder prediction 212 230 - -
Trre2g00252 733 MobiDBLite consensus disorder prediction 713 733 - -
Trre2g00252 733 MobiDBLite consensus disorder prediction 253 292 - -
Trre2g00252 733 MobiDBLite consensus disorder prediction 186 230 - -
Trre2g00252 733 Gene3D HUPs 6 182 IPR014729 -
Trre2g00252 733 SMART tyrkin_6 411 689 IPR020635 GO:0004713|GO:0006468
Trre2g00252 733 PANTHER OS01G0750732 PROTEIN 281 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00252 Trre-Chr2 2084358 2088998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00252 358 690 Trihelix Transcription Factor Family AT5G38560 40.857 3.12e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre2g00252 PK_Tyr_Ser-Thr 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00252 - - gmx:100813141 1150.58