Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00248 ATGACTATTATTCCTTCCTTACTCTGTTCTCTCCAAGTTCTCCTAATCATAATATTCACATCTCAAACCAAAGCTGTAGTATACGATGAAATAAACTTATACCACTACATTTGTGATCATAGTAACAATAGAGGCAACTACACAACCAATAGCACCTATCACAAAAATCTCAACACACTTTTATCCACCCTCACTTCCAACACACAAATCAACTATGGTTTCTACAATTTTTCACACGGGGAAAACCTCGACAAAGTCTACGCAATTGGACTCTGTCGAGGTGATCTTTTGCCGAACAATTGTCGCAGTTGCCTCGGAAGTGCTAGAGCAAATCTCACACGTACTTGTCAAAATAGAAAAGAAGCAATTTTTTGGTCTCAAGACGAAAAATGCATGTTGCGTTATTCGGACCGATTAATATTAGGCATCATGGAAGATGTTCCTATGTTTGTTTCGAATAACGATGATGATTCGGTTGATGTTGATTTGTCCAATGAAGTTGTTAATAATTTGTTGGGAAATTTAACAAGTAGAGCTGTGAAAGGTGATTCTAGGATTAAATATGCTGCATCAAGTTTACCTGGTCCTAAGTATGAGGTTATATATGGTTTAGTTCAGTGTACACCTGATTTGTCAGAGACTGATTGCAATTCATGTTTGGTTAAGAGTCTTCAACAAATTCCAAGTTGTTGTAAAAATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAGACCTCTTTTCTTTTCTATGAACCTAGAGCGTCACCGCCGCCGCCACCACCATCTCCTCCTCCACCCGCCACCACCGGTAGCAACACTACCTCACAAGGGAAAAGCAAGAACAATAATTTAAGACTAAGGAGGCCAAAGAAAAGGTTTGAAGAAATTCAAGAAGAAGAAGAAGACGGAGAAGACAAAATTGAAATTTCCGAACCCTTGCAGTTCAACTTCAACACCATATGTAGCGCTACAAATGACTTCTCTAATTCTAATAAACTTGGAGAAGGCGGATTCGGGATTGTTTACAAAGGTAGGCTTTCCAATGGAGAAGAGATTGCTGTCAAAAGGTTGTCGGTGAATTCTGGACAAGGAGATTCAGAGTTTAAGAATGAGGTGGTTTTAGTGGCAAAGCTTCAACACCGAAATTTAGTTAGACTACTCGGTTTCTGTCTAGAAGGAAGAGAAAGAGTACTTGTATATGAGTTTGTTCATAATAAAAGTCTTGATTATTTTATTTTTGATCAAGCTAAGAGAGCACAATTAAATTGGGAATTGCGCTACAAAATCATTTTAGGTATTGCTCGAGGCATTTTGTACCTTCACGAGGATTCTCGACTACGCATTATTCATCGTGATCTCAAAGCAAGTAACATTCTTTTAGACGAAGAGATGAATCCTAAGATAGCCGATTTTGGCATGGCAAGACTATTTGTTGTGGACCAAACTCAGGAAAAGACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTACGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTCTTCAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTGGTACAAAAAATAGCGGCATTCGTGATACAGAGTATCTCTCGAGCTTTGCATGGAGAAATTGGAAGGAAGGTACTGCAACAAATATCATAGATCCCACATTAAACAATGATTCAAGAAATGAAATATTGAGATGTATCCATATTGGATTACTCTGTGTTCAAGAGAATGTAACTAGTAGACCAACCATGGCTTCTGTTGTAGTGATGCTTAATAGTCATTCTGTCACTCTTCCAATGCCTTTGGAGCCTGCATTTCATATGGATAGTGGAGATATGAAATCATGGGGTCATAGTTCAGCTCAAGAATCAGTCAATCATGCTTCAAATACAGAGTTATATCCTCGCTAG 1935 0.3819 MTIIPSLLCSLQVLLIIIFTSQTKAVVYDEINLYHYICDHSNNRGNYTTNSTYHKNLNTLLSTLTSNTQINYGFYNFSHGENLDKVYAIGLCRGDLLPNNCRSCLGSARANLTRTCQNRKEAIFWSQDEKCMLRYSDRLILGIMEDVPMFVSNNDDDSVDVDLSNEVVNNLLGNLTSRAVKGDSRIKYAASSLPGPKYEVIYGLVQCTPDLSETDCNSCLVKSLQQIPSCCKNKIGGRVVRPSCNMRFETSFLFYEPRASPPPPPPSPPPPATTGSNTTSQGKSKNNNLRLRRPKKRFEEIQEEEEDGEDKIEISEPLQFNFNTICSATNDFSNSNKLGEGGFGIVYKGRLSNGEEIAVKRLSVNSGQGDSEFKNEVVLVAKLQHRNLVRLLGFCLEGRERVLVYEFVHNKSLDYFIFDQAKRAQLNWELRYKIILGIARGILYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFVVDQTQEKTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGILVLEIVSGTKNSGIRDTEYLSSFAWRNWKEGTATNIIDPTLNNDSRNEILRCIHIGLLCVQENVTSRPTMASVVVMLNSHSVTLPMPLEPAFHMDSGDMKSWGHSSAQESVNHASNTELYPR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00248 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Trre2g00248 644 MobiDBLite consensus disorder prediction 623 644 - -
Trre2g00248 644 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Trre2g00248 644 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre2g00248 644 SMART serkin_6 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00248 644 MobiDBLite consensus disorder prediction 621 644 - -
Trre2g00248 644 Gene3D Transferase(Phosphotransferase) domain 1 408 606 - -
Trre2g00248 644 Gene3D Phosphorylase Kinase; domain 1 294 407 - -
Trre2g00248 644 FunFam Cysteine-rich receptor-like protein kinase 10 148 252 - -
Trre2g00248 644 CDD STKc_IRAK 338 600 - -
Trre2g00248 644 FunFam Cysteine-rich receptor-like protein kinase 28 408 607 - -
Trre2g00248 644 ProSiteProfiles Gnk2-homologous domain profile. 146 253 IPR002902 -
Trre2g00248 644 Pfam Protein tyrosine and serine/threonine kinase 335 598 IPR001245 GO:0004672|GO:0006468
Trre2g00248 644 Gene3D - 34 139 IPR038408 -
Trre2g00248 644 Gene3D - 150 252 IPR038408 -
Trre2g00248 644 FunFam Cysteine-rich receptor-like protein kinase 10 293 407 - -
Trre2g00248 644 Pfam Salt stress response/antifungal 166 250 IPR002902 -
Trre2g00248 644 Pfam Salt stress response/antifungal 38 137 IPR002902 -
Trre2g00248 644 MobiDBLite consensus disorder prediction 257 273 - -
Trre2g00248 644 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 140 - -
Trre2g00248 644 SUPERFAMILY Protein kinase-like (PK-like) 314 599 IPR011009 -
Trre2g00248 644 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 637 - -
Trre2g00248 644 MobiDBLite consensus disorder prediction 255 313 - -
Trre2g00248 644 ProSiteProfiles Protein kinase domain profile. 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00248 Trre-Chr2 2064222 2067834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00248 13 644 Receptor kinase-like Gene Family AT4G21410 48.892 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g00248 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00248 - - gmx:113000774 755.747