LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g00247	ATGGCTATGCATATAATTTCCTTTCTCCTCCTAATCTTAATCATTTTTTCATCAACAAAATTATCCAACGCCAACAACACCGCACAAAACTTCCACTACTTCTGTAATTCTAACAATAGAGGTAACTATACTGCCAACAGCATCTACCACACAAACCTTAACACCCTTTTATCCACTCTCACTTCCAACACAAAAATCAACAACTACGGTTTCTATAATATCTCAAACGGCGAAAACACAAACAAAGTAAACGCTATTGGTCTTTGCAGAGGCGATGTTAAACAAAACGAGTGTCTTAATTGCCTCAAAAGTTCAAGCAACAATCTCACACAGCTTTGTCCAAACCAAAAAGAAGCAATTGGTTGGTATGAAGACGAAAAATGCATGTTGCGTTATTCTGACCGATCGATATTTGGTTTATTGGAAACAGGACCTGCATACTATGCAAACAATATGTTAAATGCAAGTGATTTGAATGAGTTCAATCAACTTGTCCGCAATTTGCTTGATAATTTGACTAACAAAGCTTCATCCGGTGATTCTCGTTTGAAATATGCCGCGGATAGTACGCGCGGCCCTAATGATCAAACTATATATGGTCTTGTTCAGTGTACACCTGATTTGTCTGAGTCAGATTGCAATTCATGTTTGGTGCAATCTATTTCAAGAATACCAACTGATTGTTGTAAAGATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAACATGAGATTTGAAACATCTTTCCGCTTCTATGATCCTATAGCAGCAACAACACCACCACCTCCTCCTCCTCATCCAGGAAAGAGCCACACTGTCACTATCATTGCCATAACAGTACCAATTGGTTCTGTTATGGTGCTCATTTTAATCTGCCTCTATTTAAGAGTAAGGAAGCCAAGCAAAAGGTTTAGAATTAAAGAAGAAGAAGAAGATGATGAGATTGAAATTTCTGAGTCATTGCAATTCAACTTTGACACGATAAAAGAGGCAACAGATGACTTTTCTGGTTCTAATATACTTGGACAAGGTGGATTTGGGACTGTTTACAAAGGTAGATTCCCAAATGGTCAAGAGATTGGTGTCAAAAGGTTGTCGAGGGATTCTGGCCAAGGAGATTTAGAATTTAAGAACGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTTTGTATAGAAGGAAGAGAAAGACTACTTGTATATGAATTTGTTCATAATAAGAGTCTTGATTACTTCATTTTTGATCAAACTAAGAGAGCCGACTTAAATTGGGAAAGACGCCATAAAATCATTTTAGGTATTGCTCGAGGAATTATTTACCTTCATGAGGATTCTCGGCTACGCATTATCCATCGTGATCTTAAAGCAAGTAACATTCTCTTAGATGAAGAGATGAATCCAAAGATAGCAGATTTTGGCATGGCTAGACTATTTGATGTGGACCAAACTCAGGAAAATACAAGTAGAATTGTGGGAACCTATGGATATATGGCCCCTGAATATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGCCACAAAAACAGTGGCATTCGTCGTGGGAGTACTACAGAGTATCTACTAAGCTTTGTATGGCGAAATTGGAGGGATGGATCACCAACAAATACTATAGATCCCACATTAACCAATGATTCAGTGAATGAAATAATGAGATGCATCCACATTGGATTACTATGTGTTCAAGAAAATGCAGCTAGTAGGCCAACTATGGCTTCTGTTGTACTAATGCTTAATAGTCATTCTCTCACTCTTTCAAGACCTTCAGAACCTGCATTTTATGTGGGAAGTGAAGTTGGAGACTTTCAAGATTACACGATGAAATCATCAGAATATAATTCAGTTCAAGGATCAGTAAATGAGGCTTCGATTACAGAGCCATATCCTCGCTAG	1977	0.3789	MAMHIISFLLLILIIFSSTKLSNANNTAQNFHYFCNSNNRGNYTANSIYHTNLNTLLSTLTSNTKINNYGFYNISNGENTNKVNAIGLCRGDVKQNECLNCLKSSSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFGLLETGPAYYANNMLNASDLNEFNQLVRNLLDNLTNKASSGDSRLKYAADSTRGPNDQTIYGLVQCTPDLSESDCNSCLVQSISRIPTDCCKDKIGGRVVRPSCNMRFETSFRFYDPIAATTPPPPPPHPGKSHTVTIIAITVPIGSVMVLILICLYLRVRKPSKRFRIKEEEEDDEIEISESLQFNFDTIKEATDDFSGSNILGQGGFGTVYKGRFPNGQEIGVKRLSRDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVHNKSLDYFIFDQTKRADLNWERRHKIILGIARGIIYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGIRRGSTTEYLLSFVWRNWRDGSPTNTIDPTLTNDSVNEIMRCIHIGLLCVQENAASRPTMASVVLMLNSHSLTLSRPSEPAFYVGSEVGDFQDYTMKSSEYNSVQGSVNEASITEPYPR	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g00247	658	Pfam	Protein tyrosine and serine/threonine kinase	340	604	IPR001245	GO:0004672\|GO:0006468
	Trre2g00247	658	ProSiteProfiles	Gnk2-homologous domain profile.	31	137	IPR002902	-
	Trre2g00247	658	ProSiteProfiles	Protein kinase domain profile.	336	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g00247	658	Gene3D	Transferase(Phosphotransferase) domain 1	412	616	-	-
	Trre2g00247	658	FunFam	Cysteine-rich receptor-like protein kinase 10	299	411	-	-
	Trre2g00247	658	Gene3D	-	28	136	IPR038408	-
	Trre2g00247	658	Gene3D	-	145	250	IPR038408	-
	Trre2g00247	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Trre2g00247	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	25	655	-	-
	Trre2g00247	658	Gene3D	Phosphorylase Kinase; domain 1	299	411	-	-
	Trre2g00247	658	CDD	STKc_IRAK	342	607	-	-
	Trre2g00247	658	FunFam	Cysteine-rich receptor-like protein kinase 10	145	251	-	-
	Trre2g00247	658	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	28	137	-	-
	Trre2g00247	658	SUPERFAMILY	Protein kinase-like (PK-like)	319	606	IPR011009	-
	Trre2g00247	658	FunFam	Cysteine-rich receptor-like protein kinase 28	412	614	-	-
	Trre2g00247	658	SMART	serkin_6	336	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g00247	658	Pfam	Salt stress response/antifungal	35	134	IPR002902	-
	Trre2g00247	658	Pfam	Salt stress response/antifungal	156	248	IPR002902	-
	Trre2g00247	658	ProSiteProfiles	Gnk2-homologous domain profile.	143	251	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g00247	Trre-Chr2	2053774	2057233	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g00247	36	658	Receptor kinase-like Gene Family	AT4G21410	53.282	0.0	638

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre2g00247		PK_Tyr_Ser-Thr	2.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g00247	-		-	var:108324787	838.95