Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00236 ATGGGTTGGCTTAGTAGAATTTTTAAAGGCTCTGACCATAAGGTTTCAGAAGGGCATTACTATAAAGACGATTCGAGTTATTACTTGCCGTCAACTTCAGGGGATGTTTGGGCTGAGAACGAGAATGAAGATATTGATCGTGCTATTGCATTGTCTTTAGCGGAAGACAATCATAAAGCGAAAAAAGTTAAAGACCACAAATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAATAATAACATGTATCAACCAATTCAGTATTTTCCGACGGGGTACAGGATATGTGCTGGCTGCAATGCTGAGATTGGTTATGGACGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACATCCGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTTCTATCATGGATACTAACGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGGCAAGCACTTAACGAAGCAAGGGAGGGAGAGAAAAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCTGAGGAACTCAGCACTATTTCAAGACGACCTAGACTTGGGACAGGAAATAAAGCAATAGGCATGAGAACACAACCTTACAACGTGACTGCTCGATGTGATGTTACAGCAATTCTCATTCTATATGGTCTTCCAAGATTACTTACCGGATCAATTCTAGCACATGAGATGATGCATGCATGGCTGCGGCTATCAGGTTTCCGGACTCTTAGTCAAGACGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCATCAGGAAGCAATTTTGTACCAGGCTCATCCTCATCTGCATCATATACATCTAAGAAAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCGGACATTTCCCCTGTTTATGGTGATGGATTTAGGGCAGGTCAAAAAGCGGTTCGCAAGTATGGCTTACAAAGAACCCTTCACCATATCAAGATGACGGGGAGTTTCCCATATGAAGTATAG 1428 0.43 MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDVWAENENEDIDRAIALSLAEDNHKAKKVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNNNMYQPIQYFPTGYRICAGCNAEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSSIMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNKAIGMRTQPYNVTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLSGFRTLSQDVEEGICQVLAHMWLESELSSASGSNFVPGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGSFPYEV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00236 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 201 - -
Trre2g00236 475 Coils Coil 53 83 - -
Trre2g00236 475 CDD LIM_DA1 113 165 - -
Trre2g00236 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Trre2g00236 475 Pfam Protein DA1 263 468 IPR022087 -
Trre2g00236 475 PANTHER PROTEIN DA1-RELATED 2 3 473 IPR045218 -
Trre2g00236 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 138 - -
Trre2g00236 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Trre2g00236 475 Pfam LIM domain 113 167 IPR001781 -
Trre2g00236 475 FunFam Protein DA1-related 1 107 166 - -
Trre2g00236 475 ProSitePatterns LIM zinc-binding domain signature. 113 147 IPR001781 -
Trre2g00236 475 Gene3D Cysteine Rich Protein 104 170 - -
Trre2g00236 475 MobiDBLite consensus disorder prediction 397 420 - -
Trre2g00236 475 SMART lim_4 112 164 IPR001781 -
Trre2g00236 475 MobiDBLite consensus disorder prediction 397 415 - -
Trre2g00236 475 SMART uim 71 90 IPR003903 -
Trre2g00236 475 SMART uim 40 59 IPR003903 -
Trre2g00236 475 ProSiteProfiles LIM domain profile. 111 171 IPR001781 -
Trre2g00236 475 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Trre2g00236 475 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00236 Trre-Chr2 1980499 1985163 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g00236 DA1-like 4.9e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00236 - - gmx:100783253 835.484