Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00235 ATGAATCAAGTTGTGTTTAACCTCATTTTCTTCATACTAAGCATTCTACTTTCATCAAAAACCAAGGCACAACAGAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATACTACGGGACCTTCACCAGCATTTCTTTACACCTGCAATGGCCTCAACAGATCCTGCATGAGCTTTCTCACCTTCAAATCCAATCCTCCTTATAACTCTGTTACCACAATTTCCAACTTCACATCATCGAACCCGGACGAGCTAGCCAGAATCAACGGCGCCAGTTTGGTTACAGTTTTCCCACCTGGTAAAGAGGTTATTGTTCCTGTCAACTGTTCTTGTTTAACCAAGGATTATTACCAAGCTGAAACCAAATATATATTAGGTCTAAACCCAACATATTTCATAGTAGCAAACGATACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCATATGGAGAACTTGATTTGCTTAAAGGAATAGAGTTGGATGTGCCACTCCGATGCGCTTGTCCAACGTATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCTACAAGATTCAATGTAACAGTAGGTAATCTACTTGATGCCAATGGTTTTTCGGCACAAACGGAACTCCTTTATCCATTCACAACTGTTCTGATTCCTTTGGCAAGTGAACCGGTGAGTTTAACAACCGTAGTTGCTAATGATCCTCCACCACCACCACCACCAACCTCTCTTGGTTGCAGCTTCAAAGAGTGCAAATCAAACAGGAAAGTACTCCTCATTGCTTTAACCACCTCAGTGCTGGTTCTGTGTGTCTTCTTGTTTGTACTGTTTATGTTTCTGTTTCTGCTCGGAAAGAGATCGGCAAGGTTCGTTAAGAGAGGAACACAATTTAACAATAAAAGAGGGGTGTTTTCTGAAGAGATCCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAGGCAACTGAGAATTTTAGTCCAAAGAACAGAATCAAAGGTTCTTTATTTCGTGGTGTATTCGACAATGGCAAAGAAGTGTTGGCTGTTAAAAGAATGAGAAGAGACGCTTCCACAGAAATCAGTTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAACTGCAAGGTTACTGTGAAAACAATGAATGCATATATCTTGTTTATGAATACATAGAGAATGGATCTTTAAGAGAATGGCTTAACAAGAATAGGTCCATTGAACACCAAAGTTGGGAAAAGAGGATACAGATTGCTTTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAACAGTGGAAACGTTCTATTGAACAAAGATTTAAGGGCCAAGATAGCAAATTTTGCTCGAGCTGAAGAATCAAAAAGGATGATATCTTCTGGTTGTCCCACATCACATGCTGTAGGATCTGTCGGTTATTTGGCGCCCGAGTATCTCAAGGAAGGGGTAGTCAGCACCAAAATGGACATCTACGCCTTTGGAGTTGTTCTGTTGGAATTGATCACTGGCAAAGATTCAATTACCCTGCGAGATGGAAGAGAAGTAATGCTTTGTGAAATCATAGAAAATATAGTTGGCAAAGAGAATGAACAAGAGAAGGTGAGTTTGTTCATTGATCCTTGCCTCACTGAAAACTGTAGGAAAGCATGTGCACTGCAGCTAGTTAAACTCACTCTAGCCTGCTTGATCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTAGTCTCTAGCTTACTAAAAATACAGGCAAATGAAATGCAACAAAGAATATCCCCCATCATCAATAAAAGCCTAAGCCTGGAGAGGTGA 1920 0.4021 MNQVVFNLIFFILSILLSSKTKAQQNYSGNSILSCKNNDTTGPSPAFLYTCNGLNRSCMSFLTFKSNPPYNSVTTISNFTSSNPDELARINGASLVTVFPPGKEVIVPVNCSCLTKDYYQAETKYILGLNPTYFIVANDTFQGLSTCDSLMRANPYGELDLLKGIELDVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTVGNLLDANGFSAQTELLYPFTTVLIPLASEPVSLTTVVANDPPPPPPPTSLGCSFKECKSNRKVLLIALTTSVLVLCVFLFVLFMFLFLLGKRSARFVKRGTQFNNKRGVFSEEIREEIAIIEHLSKVYSFEEIKEATENFSPKNRIKGSLFRGVFDNGKEVLAVKRMRRDASTEISLLKRINHFNLIKLQGYCENNECIYLVYEYIENGSLREWLNKNRSIEHQSWEKRIQIALDIANGLQYLHNFTEPCYVHKDINSGNVLLNKDLRAKIANFARAEESKRMISSGCPTSHAVGSVGYLAPEYLKEGVVSTKMDIYAFGVVLLELITGKDSITLRDGREVMLCEIIENIVGKENEQEKVSLFIDPCLTENCRKACALQLVKLTLACLIQEPESRPNIEEVVSSLLKIQANEMQQRISPIINKSLSLER 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00235 639 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Trre2g00235 639 ProSiteProfiles Protein kinase domain profile. 293 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00235 639 SUPERFAMILY LysM domain 189 235 IPR036779 -
Trre2g00235 639 FunFam PTI1-like tyrosine-protein kinase 3 416 628 - -
Trre2g00235 639 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Trre2g00235 639 SMART LysM_2 190 235 IPR018392 -
Trre2g00235 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 622 - -
Trre2g00235 639 Pfam Protein tyrosine and serine/threonine kinase 377 615 IPR001245 GO:0004672|GO:0006468
Trre2g00235 639 Gene3D LysM domain 189 245 IPR036779 -
Trre2g00235 639 Gene3D Phosphorylase Kinase; domain 1 311 415 - -
Trre2g00235 639 SUPERFAMILY Protein kinase-like (PK-like) 331 625 IPR011009 -
Trre2g00235 639 Pfam LysM domain 191 235 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00235 Trre-Chr2 1977992 1979911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00235 6 620 Receptor kinase-like Gene Family AT2G23770 38.095 8.54e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre2g00235 PK_Tyr_Ser-Thr 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00235 - - gmx:100806221 834.713