Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00233 ATGTATTCATGTAGTATGTGTATGGATCAGGTTTTGACTTCAACAAAAGATCTATCGTTTCTTCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCCTTCTCAAGCAATAATAATAACAATGATACTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTTTGTAAGGCGATGATTGAGGAGGAGAAGTTGGTTCCTTTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCGAAATCTATTCCCGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCGCAGGTGGCTTGGGTGGATTGGGAGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTTCTGCAGGATTTGGCAGTTTTATACCATCCTTATTTAACTTTCAGATGCATGGATTTCATGGTGGAGCCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGATTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCCGCACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGATGTTTGTTATTTTTTGCGTGGTACTTGCTTTGCTTTGGCAATAG 765 0.4235 MYSCSMCMDQVLTSTKDLSFLQMASGFGESTSRSPPSPPFSSNNNNNDTGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFAGGLGGLGGFAPATTARFGNFTFSAGFGSFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPPHTGQGQQDYYLKRLLMFVIFCVVLALLWQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00233 254 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Trre2g00233 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 108 IPR013083 -
Trre2g00233 254 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 38 108 - -
Trre2g00233 254 CDD RING-HC_AtRMA-like 52 96 - -
Trre2g00233 254 SMART ring_2 54 94 IPR001841 -
Trre2g00233 254 SUPERFAMILY RING/U-box 50 107 - -
Trre2g00233 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 35 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre2g00233 254 MobiDBLite consensus disorder prediction 108 145 - -
Trre2g00233 254 ProSiteProfiles Zinc finger RING-type profile. 54 95 IPR001841 -
Trre2g00233 254 Pfam Zinc finger, C3HC4 type (RING finger) 52 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00233 Trre-Chr2 1954981 1957369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00233 52 237 C3H Transcription Factor Family AT1G19310 68.394 9.57e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00233 K10666 - zju:107420294 381.719