Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g00233 | ATGTATTCATGTAGTATGTGTATGGATCAGGTTTTGACTTCAACAAAAGATCTATCGTTTCTTCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCCTTCTCAAGCAATAATAATAACAATGATACTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTTTGTAAGGCGATGATTGAGGAGGAGAAGTTGGTTCCTTTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCGAAATCTATTCCCGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCGCAGGTGGCTTGGGTGGATTGGGAGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTTCTGCAGGATTTGGCAGTTTTATACCATCCTTATTTAACTTTCAGATGCATGGATTTCATGGTGGAGCCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGATTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCCGCACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGATGTTTGTTATTTTTTGCGTGGTACTTGCTTTGCTTTGGCAATAG | 765 | 0.4235 | MYSCSMCMDQVLTSTKDLSFLQMASGFGESTSRSPPSPPFSSNNNNNDTGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFAGGLGGLGGFAPATTARFGNFTFSAGFGSFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPPHTGQGQQDYYLKRLLMFVIFCVVLALLWQ | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g00233 | 254 | ProSitePatterns | Zinc finger RING-type signature. | 69 | 78 | IPR017907 | - | |
Trre2g00233 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 108 | IPR013083 | - | |
Trre2g00233 | 254 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 38 | 108 | - | - | |
Trre2g00233 | 254 | CDD | RING-HC_AtRMA-like | 52 | 96 | - | - | |
Trre2g00233 | 254 | SMART | ring_2 | 54 | 94 | IPR001841 | - | |
Trre2g00233 | 254 | SUPERFAMILY | RING/U-box | 50 | 107 | - | - | |
Trre2g00233 | 254 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 35 | 251 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Trre2g00233 | 254 | MobiDBLite | consensus disorder prediction | 108 | 145 | - | - | |
Trre2g00233 | 254 | ProSiteProfiles | Zinc finger RING-type profile. | 54 | 95 | IPR001841 | - | |
Trre2g00233 | 254 | Pfam | Zinc finger, C3HC4 type (RING finger) | 52 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g00233 | Trre-Chr2 | 1954981 | 1957369 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g00233 | 52 | 237 | C3H Transcription Factor Family | AT1G19310 | 68.394 | 9.57e-87 | 255 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g00233 | K10666 | - | zju:107420294 | 381.719 |