Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00188 ATGAAAATGAAGAGTGGAATAACAGTGAGTGTTGTTATGATGGTGTTGTTTTTGTTAGTTGAGTTAACAATGAGTTTGAGTTCAAGAGATGAATGGTTGGCGTTATTGGAGCTTCGTTCGTCGTTGGGGATAAGAGGAAAAGATTGGCATAAAAAAGTCGAACCGTGTGGGAACTGGACTGGTGTTAAATGCAGGAATGATCGAGTTGTTGGTATCAGCGTGTCCGGGTTGAAGAGAACCCGATTGGGCCGTCTTAACCCGAGTTTTGAAGTGGATTCTCTACAAAATTTCACTCTATTGGAGTCTTTCAATGCTTCTGGGTTCATGCTTAATGGGTCTATTCCTGACTTGTTTGGTGAGAAACTTAGTACACTACAAGAGCTTGATTTAAGGTCTTGTTCAATATCTGGTGTGATTCCTGGTTCACTTGGGGGTATGAGAAGTTTGAAGCTTTTATTTCTTTCAGGGAATAATCTTACTAGTAGAGTGCCTTCAAGTTTGGGGTTGTTATCCAATCTTTCTATTCTTGATCTCTCTGGAAATATGTTTTCAGGATCAGTACCTGACAATTTCTCTAATCTTGGTAACCTTACAAGGCTTGATCTTTCTAATAATTACTTATCTGGGTCTATTTCACCTGAACTGGGTAGCCTTTCAAATCTTCAAAATTTGAACCTTTCTGATAATGCTTTCACTGGTTCTGTTCCCTCTCAGCTACGTAATCTTTCAAAGTTGGCTGAGCTTGATCTTAGTATGAATTCTTTTTCTGGGTCGTTACCTGTTAGTTTGTGGTCAATGCCTAGTTTGCGCTTTTTTGATGTATCAGGCAACAGTCTCACTGGTCCACTGCCAAAATTGTCTGGTTTAAATGTTAGCTCAAATGATGGCACATTCAATCTATCAAACAATTTGTTTTACGGATCTGTAAATGGTTCTACGAGCAAGATTAAAATTATTGATTTATCTGGTAATTATTTGGATGGTGTTGTGCAAGGTGGCGGTGATGGTCTTACTCTAGCTAGGAATTGCCTACAGAAGATTCCAAACCAGAGGAGTTTGGAAGATTGTAGAATGTTTTATCTCCAGAGAAATTTACCCTTTGATCAGGACCTTGAGTCCAAGAAAAACAATAAAAGAGTGATATTCATACTGGCAGGTATATTTGGTGGGTTTGGCTTTATTGTTCTACTGGTACTGGTCCTCATATTGGTTCTGAAACAATGTCACAAAAGTAAGGATTTGGAAACTGAAAGAGGGACCACAAATGGGGGGCCTGTTACAGAAGGGGAAAGTCCTACACCTAAGGATCCTGTTTTTGTAACTGCCGTGGGTGAATCATTTACTTTTGAACAAATACTCCATTTTACTGGCAATTTTGATGAAGCAAACTCGATAAAGCAAGGTCATTCTGGAGACTTTTTCTGGGGAGTTTTGGAAAACGGAGCAACCGTAGTTATCAAAAGGGTAGATTTAAGTTTATTCAAGAGAGAATCTTACATTGTGGAATTGGAATTATTAAGCAAGGTTTCACATGCAAGATTGGTCCCAATTTTGGGACAATGCATGGACAATGAGAAGATTAAATGTATAGTTTACAAGTATATGATAAATGGAGATTTGGCTAGTTCCTTACACAGAGAAAGTGGTTCAGATGGTAAATTGCAGTCCATGGATTGGATCACAAGATTGAAAATTGCAGCAGGAGCTGCTGAAGGACTAGCTTACCTACATGATTGCAGCCCTCCTCTTGTTCACAGAGATATCCGAGCTAGTAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTAAAGCACAAGGAGATTTTCATCAGAATGTCGTGTCAAGAGTTTTCAGCAAGCCACAATCTTCTAATCAAGGCAATCCTGGTAAATCATCTGTGACATGTGCCTATGATGTCTACTGTTTTGGAAAGATTTTAATCGAGCTTGTTACTGGTAATACTGATATAAGCAAATCAGATGATGCCACCACAAAGGATTGGTTAGAGCAAACCTTGAATTACATCACCATATATGATAAAGAACGGTTGGCTAAGATTGTTGACCCAACTTTGATAGTGGATGAGGACCTGTTGGAAGAGGTATGGGCTATGGCAATCGTGGCTAAGTCATGTCTGAATCCTAAACCTTCAAAACGTCCTCCAATGAAACATGTCCTCAAAGCACTTGAAAATCCATTGAAGATTGTCAGAGAAGAAAGTTTTAGCTCAGCAAAATTGAGAACAACTTCATCTAATAGATCTTGGAGCACTGCATTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGGTGCTACAATTAGGGAGGGTACTAGTAGTGGCAATAAACAAACAGGAAGATCAGGTTCTCATGGTAGTTGTGGTAATGATCACTCCTCTTCCAATAAAAGGTCATCCAATGAAGTTTTCCCTGAACCATTGGGAATGCAAGACATGGAGAATGGAAAGGCAAGATGA 2499 0.393 MKMKSGITVSVVMMVLFLLVELTMSLSSRDEWLALLELRSSLGIRGKDWHKKVEPCGNWTGVKCRNDRVVGISVSGLKRTRLGRLNPSFEVDSLQNFTLLESFNASGFMLNGSIPDLFGEKLSTLQELDLRSCSISGVIPGSLGGMRSLKLLFLSGNNLTSRVPSSLGLLSNLSILDLSGNMFSGSVPDNFSNLGNLTRLDLSNNYLSGSISPELGSLSNLQNLNLSDNAFTGSVPSQLRNLSKLAELDLSMNSFSGSLPVSLWSMPSLRFFDVSGNSLTGPLPKLSGLNVSSNDGTFNLSNNLFYGSVNGSTSKIKIIDLSGNYLDGVVQGGGDGLTLARNCLQKIPNQRSLEDCRMFYLQRNLPFDQDLESKKNNKRVIFILAGIFGGFGFIVLLVLVLILVLKQCHKSKDLETERGTTNGGPVTEGESPTPKDPVFVTAVGESFTFEQILHFTGNFDEANSIKQGHSGDFFWGVLENGATVVIKRVDLSLFKRESYIVELELLSKVSHARLVPILGQCMDNEKIKCIVYKYMINGDLASSLHRESGSDGKLQSMDWITRLKIAAGAAEGLAYLHDCSPPLVHRDIRASSILLDDKFEVRLGSLSEVKAQGDFHQNVVSRVFSKPQSSNQGNPGKSSVTCAYDVYCFGKILIELVTGNTDISKSDDATTKDWLEQTLNYITIYDKERLAKIVDPTLIVDEDLLEEVWAMAIVAKSCLNPKPSKRPPMKHVLKALENPLKIVREESFSSAKLRTTSSNRSWSTAFFGSWRHSSSDSGATIREGTSSGNKQTGRSGSHGSCGNDHSSSNKRSSNEVFPEPLGMQDMENGKAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00188 832 Pfam Protein tyrosine and serine/threonine kinase 464 735 IPR001245 GO:0004672|GO:0006468
Trre2g00188 832 FunFam Putative LRR receptor-like serine/threonine-protein kinase 535 756 - -
Trre2g00188 832 Gene3D Phosphorylase Kinase; domain 1 430 534 - -
Trre2g00188 832 MobiDBLite consensus disorder prediction 771 832 - -
Trre2g00188 832 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 187 - -
Trre2g00188 832 SUPERFAMILY L domain-like 48 332 - -
Trre2g00188 832 Pfam Leucine rich repeat 219 279 IPR001611 GO:0005515
Trre2g00188 832 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Trre2g00188 832 SMART LRR_typ_2 194 217 IPR003591 -
Trre2g00188 832 SMART LRR_typ_2 122 145 IPR003591 -
Trre2g00188 832 SMART LRR_typ_2 242 266 IPR003591 -
Trre2g00188 832 SMART LRR_typ_2 170 193 IPR003591 -
Trre2g00188 832 SMART LRR_typ_2 218 241 IPR003591 -
Trre2g00188 832 SMART LRR_typ_2 146 169 IPR003591 -
Trre2g00188 832 Gene3D Transferase(Phosphotransferase) domain 1 535 758 - -
Trre2g00188 832 Gene3D Ribonuclease Inhibitor 191 378 IPR032675 -
Trre2g00188 832 FunFam Leucine-rich receptor-like protein kinase family protein 188 285 - -
Trre2g00188 832 ProSiteProfiles Protein kinase domain profile. 459 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00188 832 ProSiteProfiles Leucine-rich repeat profile. 196 219 IPR001611 GO:0005515
Trre2g00188 832 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 94 737 - -
Trre2g00188 832 MobiDBLite consensus disorder prediction 415 434 - -
Trre2g00188 832 FunFam Predicted protein 431 534 - -
Trre2g00188 832 MobiDBLite consensus disorder prediction 771 815 - -
Trre2g00188 832 SUPERFAMILY Protein kinase-like (PK-like) 439 736 IPR011009 -
Trre2g00188 832 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Trre2g00188 832 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00188 Trre-Chr2 1621038 1624271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00188 31 628 Miscellaneous Gene Families AT2G16250 46.697 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Trre2g00188 PK_Tyr_Ser-Thr 8.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00188 - - gmx:100798381 1065.83