Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00187 ATGGCTTCAAGTTCAACTTGGACAACAAAGCAAAACAAAAGATTTGAGAATGCTTTGGCTATCTATGACAAGGACACCCCGGATCGGTGGCAGAAGATTGCGAGGGCGGTCGGAGGGAAGACGGTCGAGGAAGTTAAAAGGCATTATGAGATGCTAGTTGAAGATTTGAAGCAAATTGAGGAAGGTCATGTTCCATTACCTAAGTACAGGAATACTCCAACAATAGGAGGTAGCATTAAAGGTTACACTTACAATGATGAAGAACAAAGGTTGAAGTTTCTAAGCCTTCATTGA 294 0.4184 MASSSTWTTKQNKRFENALAIYDKDTPDRWQKIARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNTPTIGGSIKGYTYNDEEQRLKFLSLH 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00187 97 Gene3D - 1 66 - -
Trre2g00187 97 SMART sant 3 55 IPR001005 -
Trre2g00187 97 FunFam Transcription factor SRM1 1 66 - -
Trre2g00187 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 74 IPR044636 GO:0003700
Trre2g00187 97 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trre2g00187 97 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Trre2g00187 97 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Trre2g00187 97 CDD SANT 6 53 IPR001005 -
Trre2g00187 97 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Trre2g00187 97 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00187 Trre-Chr2 1604455 1604987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g00187 Myb_DNA-binding 4.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00187 - - gmx:100804049 170.629