Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00180 ATGCTTCCCAATATCGCTGCTACAGCTCTGGAGATTCCAATTCCAAGCTGTTCTAAAGTCAAGATACATCATTCAATATGCATTGAGCTTCAAGGATTCATTGATAGAATTTTGCATATTATATTATCCGTTGAATCTGCAAGACCAAATTGTGCCTTAGCAATTCAAGCACTATGCTCTTTGAACTTCACATTGGATAAAGCAAAGTTAGTTATCAAACATTGTTCTGAGTCCAGTAAACTCTACCTGGTAATAACATCACATAAGATACTTTCAAGATGCGAAAAAATAAGAAACTCTTTTTCGTTGTACTTGACTCAGATTCAAAATACTGTTCCAATTCCATTGGTTGCTGAGATATGTACAATACTACAAGATCTAAGGGATACAAAATTTTCATTGGAATTTGAAGAAGATAAGACTAGGAAAATTTTACTTTCACTACTTGAGAAGAAATTTTCTGATTCAGTTTCAATGGAGAATGCAGAAGTTGAAGCTATTCAAATTGTAGCTTTGAGAATTTTACTTTCGCTTCGTTCTTCAAGAACCGCAATCACAAAACTCAAATCAATCTCAAATTCCCAATTTTCCACCATTCTCTTCAATCGACTTCCTCTTTCATCAATCTCCGGTCACCGGAATCTCCATTCGCATTCACCTGAACTCGGTAACTCGTTAATCGATCCGTCACTAAAAATTCACTTAAACGACAATGCCGTTCAACAAAACGACGATGAAGACGAAACCACGAATGAGTTTCTTTCAAGATTCGCTTGGATAATGAGGAAAAAGGTGAAGGAAGCGTATCCTGAATGCGATAAAAGTACTGTCGATGGAATGCTAGTTCTGATTGTTCAAAGAGTTGTTTCAGAAATGGAAAAAGGTGGTGGTGGTGGTGGTGAAAAAGCGGTGATTGATTCGGTGGATTTTAGTGAGGATCTTTGGAAAACTGTGTGGGAGGTTAGTAATAAGGTTTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAGAGTTTTTTGCAGTGTGATGAGGTTAAAGAGATGTGTAGATTCGCTGGTGAAGTTGGTATTCGAGGCGATTTGCTTAGAGAGCTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGATTTGGAGAAATTGAGGAAAGAGGGACAGGTTATTGAAGAAGAAGAAGAAGAAGAAACAAAACATGAAAGTGAGACAGAAACCGAAACTAATGTTCATGTTGATGGTAATGTTGAGGAGAAGGGTGAGAATAAGATTGTTGGGCTTCCTAAGAGGAAGGGGAAATTGAAGTTTAAGATTTATGGACTTGATCTATCTGATCCTAAATGGGAACAAGTGGCTGATAGGATTCATGAGGCAGGTGAAGTTCTTTGGCCGAAAGAGGCAAAGCCGATAACTGGGAAATGCAAACTAGTTACCGAGAAAATTCTTTCATTGAAGGAGGAGGATGGAGATGATAGTTTGTTAACCCTTTTGGCCGAGTGGGTAGAGCTTCTGCAGCCTGCTAGGGTGGATTGGTCCAATTTGCTTGAAAGGTTGAAAAACCAGAATTCTCCTTTGTACTTCAAGGTAGCAGAAAGGGTATTGACTGAAGATTCTTTCCAAACAAACATATCTGACTACTCTAGGCTTATTGATATGTATGCCAAAGAGAACCGCATTGATGATACTGAGAGGATTCTTGAGAAGATGAATGAAAATGGTATACAACCAGATGCTTCGATAGCCGGTGTGTTGGTCCACATGTACAGCAAGATAGGTAATCTTGAACGTGCAGAAGAGGCATTTAAAATCTTGAGTAGCCATGGTTTCCAACCGGACTCAAAAGTCTACAACTCAATGATCATGGCCTACATAAATGCTGGTGAACCTACAAAGGGTGAGACGCTGATGAGGCAGATGGAGACAAGAGATATTAAGCCCACAAAGGAAATATACATGGCATTTCTCCGATATTATTCTCAACGTGGTGACTTTGATCGTGCCTCGCGAACTTCAACATCTCTGCAATTTGCAGGACACCCGCAGACTCTGGAAACATGCACCCTGCTTATTGAAGCAGCTGAAGTTGCAGGTGACGTAGATAAGGTAAGCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTAATGATAGGTGCACTGCTGCCATGATTCGTGCTTATGAGAAGTCAAATTTATTGGACAAGGCATTGGATCTTCTTTTAACGTTAGAGAAAGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTATGGAATGGATGGCTAAAATGCAGCTTGTCGATGAGACTGAACAGATTTTAAACAAAATTGCTTTGCTGGGTGAAGCTCCTCCTTTTAGTGTTCAAGTTAGTCTCTGTGATATGTATGCAAGGACTAAAATGGAGAAGAAGGCCCTTCAAACACTAGGTGTTCTGATAGCAAGGAAGGACGAATTACGACAACATCAGTTTGAGAGGATTATAGCCGGCCTTATTAGTGGTGGGTTTTTGCGGGATGCACAAAGAATGCATGGGATCATGGAGGAACAGGGTTTCAAAGCACCTGGACAACTTATTTCAGCCCTTAAATCTGGCCACATACTTCTAAGTATGAGGTAA 2640 0.3992 MLPNIAATALEIPIPSCSKVKIHHSICIELQGFIDRILHIILSVESARPNCALAIQALCSLNFTLDKAKLVIKHCSESSKLYLVITSHKILSRCEKIRNSFSLYLTQIQNTVPIPLVAEICTILQDLRDTKFSLEFEEDKTRKILLSLLEKKFSDSVSMENAEVEAIQIVALRILLSLRSSRTAITKLKSISNSQFSTILFNRLPLSSISGHRNLHSHSPELGNSLIDPSLKIHLNDNAVQQNDDEDETTNEFLSRFAWIMRKKVKEAYPECDKSTVDGMLVLIVQRVVSEMEKGGGGGGEKAVIDSVDFSEDLWKTVWEVSNKVLVDMNKERKKEKMKSFLQCDEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEDLEKLRKEGQVIEEEEEEETKHESETETETNVHVDGNVEEKGENKIVGLPKRKGKLKFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEAKPITGKCKLVTEKILSLKEEDGDDSLLTLLAEWVELLQPARVDWSNLLERLKNQNSPLYFKVAERVLTEDSFQTNISDYSRLIDMYAKENRIDDTERILEKMNENGIQPDASIAGVLVHMYSKIGNLERAEEAFKILSSHGFQPDSKVYNSMIMAYINAGEPTKGETLMRQMETRDIKPTKEIYMAFLRYYSQRGDFDRASRTSTSLQFAGHPQTLETCTLLIEAAEVAGDVDKVSSNFDHMVQLGHKPNDRCTAAMIRAYEKSNLLDKALDLLLTLEKDGFEPGVATYSVLMEWMAKMQLVDETEQILNKIALLGEAPPFSVQVSLCDMYARTKMEKKALQTLGVLIARKDELRQHQFERIIAGLISGGFLRDAQRMHGIMEEQGFKAPGQLISALKSGHILLSMR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00180 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Trre2g00180 879 Pfam Pentacotripeptide-repeat region of PRORP 559 671 IPR033443 -
Trre2g00180 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Trre2g00180 879 Coils Coil 382 405 - -
Trre2g00180 879 Gene3D Tetratricopeptide repeat domain 523 682 IPR011990 GO:0005515
Trre2g00180 879 Gene3D Tetratricopeptide repeat domain 683 874 IPR011990 GO:0005515
Trre2g00180 879 PANTHER OS07G0661900 PROTEIN 260 861 - -
Trre2g00180 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Trre2g00180 879 Coils Coil 557 577 - -
Trre2g00180 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Trre2g00180 879 NCBIfam pentatricopeptide repeat 551 583 IPR002885 -
Trre2g00180 879 NCBIfam pentatricopeptide repeat 620 652 IPR002885 -
Trre2g00180 879 MobiDBLite consensus disorder prediction 394 414 - -
Trre2g00180 879 Pfam PPR repeat 728 754 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00180 Trre-Chr2 1562593 1569107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00180 21 177 U-box Gene Family AT4G36550 40.764 1.33e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00180 - - gmx:100794017 798.119